RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 RNF17Q9BXT8 1623 aaKnown RBP33.31■■■□□ 2.92
SHMT1-203ENST00000354098 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.29■■■□□ 2.92
SHMT1-203ENST00000354098 MROH1Q8NDA8 1641 aa33.29■■■□□ 2.92
SHMT1-203ENST00000354098 FER1L4A9Z1Z3 1794 aa33.26■■■□□ 2.91
SHMT1-203ENST00000354098 DEPDC5O75140 1603 aa33.25■■■□□ 2.91
SHMT1-203ENST00000354098 ESF1Q9H501 851 aaKnown RBP33.24■■■□□ 2.91
SHMT1-203ENST00000354098 PPP6R1Q9UPN7 881 aa33.24■■■□□ 2.91
SHMT1-203ENST00000354098 WASHC2CQ9Y4E1 1318 aa33.22■■■□□ 2.91
SHMT1-203ENST00000354098 RIMS1Q86UR5 1692 aaKnown RBP33.22■■■□□ 2.91
SHMT1-203ENST00000354098 PRDM15P57071 1507 aaPredicted RBP33.22■■■□□ 2.91
SHMT1-203ENST00000354098 SETD5Q9C0A6 1442 aa33.21■■■□□ 2.91
SHMT1-203ENST00000354098 CLTCQ00610 1675 aaKnown RBP33.19■■■□□ 2.9
SHMT1-203ENST00000354098 KDM5DQ9BY66 1539 aa33.18■■■□□ 2.9
SHMT1-203ENST00000354098 UNC13BO14795 1591 aa33.17■■■□□ 2.9
SHMT1-203ENST00000354098 CNTLNQ9NXG0 1405 aa33.16■■■□□ 2.9
SHMT1-203ENST00000354098 ABCC3O15438 1527 aa33.16■■■□□ 2.9
SHMT1-203ENST00000354098 PTPRMP28827 1452 aa33.16■■■□□ 2.9
SHMT1-203ENST00000354098 KANK1Q14678 1352 aa33.15■■■□□ 2.9
SHMT1-203ENST00000354098 PLPPR3Q6T4P5 718 aa33.15■■■□□ 2.9
SHMT1-203ENST00000354098 CEBPAP49715 358 aaPredicted RBP33.14■■■□□ 2.9
SHMT1-203ENST00000354098 VWDEQ8N2E2 1590 aa33.14■■■□□ 2.9
SHMT1-203ENST00000354098 NUP155O75694 1391 aa33.12■■■□□ 2.89
SHMT1-203ENST00000354098 ZMYM3Q14202 1370 aa33.12■■■□□ 2.89
SHMT1-203ENST00000354098 RAB3GAP2Q9H2M9 1393 aa33.12■■■□□ 2.89
SHMT1-203ENST00000354098 FAM135AQ9P2D6 1515 aa33.12■■■□□ 2.89
SHMT1-203ENST00000354098 CEP152O94986 1710 aa33.12■■■□□ 2.89
SHMT1-203ENST00000354098 ZC3H13Q5T200 1668 aaKnown RBP33.09■■■□□ 2.89
SHMT1-203ENST00000354098 TRIM52Q96A61 297 aa33.09■■■□□ 2.89
SHMT1-203ENST00000354098 MROH2AA6NES4 1674 aa33.08■■■□□ 2.89
SHMT1-203ENST00000354098 C3P01024 1663 aa33.06■■■□□ 2.88
SHMT1-203ENST00000354098 LMTK2Q8IWU2 1503 aa33.05■■■□□ 2.88
SHMT1-203ENST00000354098 CAMSAP1Q5T5Y3 1602 aa33.03■■■□□ 2.88
SHMT1-203ENST00000354098 IQGAP3Q86VI3 1631 aa33.03■■■□□ 2.88
SHMT1-203ENST00000354098 PCGF6Q9BYE7 350 aa33.01■■■□□ 2.88
SHMT1-203ENST00000354098 FBXO31Q5XUX0 539 aaPredicted RBP33■■■□□ 2.87
SHMT1-203ENST00000354098 PZPP20742 1482 aa32.97■■■□□ 2.87
SHMT1-203ENST00000354098 NPATQ14207 1427 aa32.96■■■□□ 2.87
SHMT1-203ENST00000354098 EFCAB6Q5THR3 1501 aa32.96■■■□□ 2.87
SHMT1-203ENST00000354098 TET3O43151 1660 aa32.96■■■□□ 2.87
SHMT1-203ENST00000354098 HRCP23327 699 aa32.95■■■□□ 2.87
SHMT1-203ENST00000354098 ARHGAP31Q2M1Z3 1444 aa32.95■■■□□ 2.87
SHMT1-203ENST00000354098 SLC4A1APQ9BWU0 796 aaKnown RBP32.91■■■□□ 2.86
SHMT1-203ENST00000354098 AEBP2Q6ZN18 517 aaPredicted RBP32.9■■■□□ 2.86
SHMT1-203ENST00000354098 ACIN1Q9UKV3 1341 aaKnown RBP32.9■■■□□ 2.86
SHMT1-203ENST00000354098 MPHOSPH9Q99550 1183 aa32.88■■■□□ 2.85
SHMT1-203ENST00000354098 E9PCH4 1651 aa32.88■■■□□ 2.85
SHMT1-203ENST00000354098 CFAP65Q6ZU64 1925 aaKnown RBP32.87■■■□□ 2.85
SHMT1-203ENST00000354098 PKD2Q13563 968 aa32.86■■■□□ 2.85
SHMT1-203ENST00000354098 ERVK-7P63135 1459 aa32.86■■■□□ 2.85
SHMT1-203ENST00000354098 RPRD2Q5VT52 1461 aaKnown RBP32.84■■■□□ 2.85
SHMT1-203ENST00000354098 PREX1Q8TCU6 1659 aa32.84■■■□□ 2.85
SHMT1-203ENST00000354098 SPATA31D1Q6ZQQ2 1576 aa32.83■■■□□ 2.85
SHMT1-203ENST00000354098 FOXD1Q16676 465 aa32.82■■■□□ 2.84
SHMT1-203ENST00000354098 TNRQ92752 1358 aa32.81■■■□□ 2.84
SHMT1-203ENST00000354098 NOS1P29475 1434 aa32.79■■■□□ 2.84
SHMT1-203ENST00000354098 SYNMO15061 1565 aa32.75■■■□□ 2.83
SHMT1-203ENST00000354098 SETD1BQ9UPS6 1966 aaKnown RBP32.74■■■□□ 2.83
SHMT1-203ENST00000354098 MYO3AQ8NEV4 1616 aa32.72■■■□□ 2.83
SHMT1-203ENST00000354098 UHRF1BP1Q6BDS2 1440 aa32.71■■■□□ 2.83
SHMT1-203ENST00000354098 PTPRTO14522 1441 aa32.7■■■□□ 2.83
SHMT1-203ENST00000354098 PLA2R1Q13018 1463 aa32.69■■■□□ 2.82
SHMT1-203ENST00000354098 IDI1Q13907 227 aa32.68■■■□□ 2.82
SHMT1-203ENST00000354098 SPHKAPQ2M3C7 1700 aa32.67■■■□□ 2.82
SHMT1-203ENST00000354098 UGGT1Q9NYU2 1555 aa32.67■■■□□ 2.82
SHMT1-203ENST00000354098 LMTK3Q96Q04 1460 aa32.67■■■□□ 2.82
SHMT1-203ENST00000354098 NLRP1Q9C000 1473 aa32.66■■■□□ 2.82
SHMT1-203ENST00000354098 SLC52A1Q9NWF4 448 aa32.63■■■□□ 2.81
SHMT1-203ENST00000354098 CEP170BQ9Y4F5 1589 aaPredicted RBP32.63■■■□□ 2.81
SHMT1-203ENST00000354098 A2ML1A8K2U0 1454 aa32.62■■■□□ 2.81
SHMT1-203ENST00000354098 TRPM2O94759 1503 aa32.62■■■□□ 2.81
SHMT1-203ENST00000354098 PIK3C2BO00750 1634 aa32.6■■■□□ 2.81
SHMT1-203ENST00000354098 HSPA2P54652 639 aa32.59■■■□□ 2.81
SHMT1-203ENST00000354098 ZNF142P52746 1687 aaPredicted RBP32.59■■■□□ 2.81
SHMT1-203ENST00000354098 DHX57Q6P158 1386 aaKnown RBP32.58■■■□□ 2.81
SHMT1-203ENST00000354098 CLTCL1P53675 1640 aa32.56■■■□□ 2.8
SHMT1-203ENST00000354098 ANKRD30BQ9BXX2 1392 aa32.55■■■□□ 2.8
SHMT1-203ENST00000354098 STAG3Q9UJ98 1225 aa32.53■■■□□ 2.8
SHMT1-203ENST00000354098 CHGAP10645 457 aaKnown RBP32.52■■■□□ 2.8
SHMT1-203ENST00000354098 UBR1Q8IWV7 1749 aa32.51■■■□□ 2.8
SHMT1-203ENST00000354098 CCDC144AA2RUR9 1427 aa32.5■■■□□ 2.79
SHMT1-203ENST00000354098 THEMISQ8N1K5 641 aaPredicted RBP32.5■■■□□ 2.79
SHMT1-203ENST00000354098 ADGRB3O60242 1522 aa32.48■■■□□ 2.79
SHMT1-203ENST00000354098 TMEM131LA2VDJ0 1609 aa32.47■■■□□ 2.79
SHMT1-203ENST00000354098 KDM5AP29375 1690 aaKnown RBP32.44■■■□□ 2.78
SHMT1-203ENST00000354098 MYO5BQ9ULV0 1848 aa32.42■■■□□ 2.78
SHMT1-203ENST00000354098 KIF1BO60333 1816 aa32.39■■■□□ 2.78
SHMT1-203ENST00000354098 TMEM2Q9UHN6 1383 aa32.38■■■□□ 2.77
SHMT1-203ENST00000354098 NCKAP5LQ9HCH0 1330 aa32.35■■■□□ 2.77
SHMT1-203ENST00000354098 ARHGAP23Q9P227 1491 aa32.35■■■□□ 2.77
SHMT1-203ENST00000354098 ZNF326Q5BKZ1 582 aaKnown RBP32.35■■■□□ 2.77
SHMT1-203ENST00000354098 SLIT1O75093 1534 aa32.35■■■□□ 2.77
SHMT1-203ENST00000354098 SIN3AQ96ST3 1273 aa32.34■■■□□ 2.77
SHMT1-203ENST00000354098 SPATA31E1Q6ZUB1 1445 aa32.34■■■□□ 2.77
SHMT1-203ENST00000354098 LTKP29376 864 aa32.34■■■□□ 2.77
SHMT1-203ENST00000354098 RGL3Q3MIN7 710 aa32.34■■■□□ 2.77
SHMT1-203ENST00000354098 ANKLE2Q86XL3 938 aa32.32■■■□□ 2.76
SHMT1-203ENST00000354098 STRCQ7RTU9 1775 aa32.31■■■□□ 2.76
SHMT1-203ENST00000354098 TXNDC2Q86VQ3 553 aa32.31■■■□□ 2.76
SHMT1-203ENST00000354098 NUTM2DQ5VT03 806 aaPredicted RBP32.31■■■□□ 2.76
SHMT1-203ENST00000354098 ZFYVE9O95405 1425 aa32.3■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms