RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KIF2AO00139 706 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-203ENST00000353578 ESF1Q9H501 851 aaKnown RBP15.42■□□□□ 0.06
COL6A3-203ENST00000353578 ZNF777Q9ULD5 760 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-203ENST00000353578 CTR9Q6PD62 1173 aa15.42■□□□□ 0.06
COL6A3-203ENST00000353578 DYDC1Q8WWB3 177 aa15.41■□□□□ 0.06
COL6A3-203ENST00000353578 STAG3Q9UJ98 1225 aa15.4■□□□□ 0.06
COL6A3-203ENST00000353578 KIF15Q9NS87 1388 aa15.4■□□□□ 0.06
COL6A3-203ENST00000353578 PDIA4P13667 645 aaKnown RBP15.4■□□□□ 0.06
COL6A3-203ENST00000353578 ERLIN1O75477 346 aa15.38■□□□□ 0.05
COL6A3-203ENST00000353578 ANKRD30AQ9BXX3 1397 aa15.38■□□□□ 0.05
COL6A3-203ENST00000353578 DNAJC2Q99543 621 aaKnown RBP15.38■□□□□ 0.05
COL6A3-203ENST00000353578 HOMER1Q86YM7 354 aa15.38■□□□□ 0.05
COL6A3-203ENST00000353578 SPRYD3Q8NCJ5 442 aa15.37■□□□□ 0.05
COL6A3-203ENST00000353578 AXDND1Q5T1B0 1012 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-203ENST00000353578 NLRP13Q86W25 1043 aa15.37■□□□□ 0.05
COL6A3-203ENST00000353578 FAM184AQ8NB25 1140 aa15.37■□□□□ 0.05
COL6A3-203ENST00000353578 NINLQ9Y2I6 1382 aa15.37■□□□□ 0.05
COL6A3-203ENST00000353578 MCM5P33992 734 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 POLR3GO15318 223 aaPredicted RBP15.36■□□□□ 0.05
COL6A3-203ENST00000353578 NFKBIBQ15653 356 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 TXLNBQ8N3L3 684 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 KIF27Q86VH2 1401 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 IQCEQ6IPM2 695 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 ROCK1Q13464 1354 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 TPRNQ4KMQ1 711 aa15.36■□□□□ 0.05
COL6A3-203ENST00000353578 MFAP1P55081 439 aaKnown RBP15.36■□□□□ 0.05
COL6A3-203ENST00000353578 IFT57Q9NWB7 429 aa15.35■□□□□ 0.05
COL6A3-203ENST00000353578 SSR1P43307 286 aaKnown RBP15.34■□□□□ 0.05
COL6A3-203ENST00000353578 GIMAP7Q8NHV1 300 aa15.34■□□□□ 0.05
COL6A3-203ENST00000353578 TAF7LQ5H9L4 462 aa15.34■□□□□ 0.05
COL6A3-203ENST00000353578 CC2D1BQ5T0F9 858 aaKnown RBP15.34■□□□□ 0.05
COL6A3-203ENST00000353578 NAP1L2Q9ULW6 460 aaPredicted RBP15.33■□□□□ 0.05
COL6A3-203ENST00000353578 CCAR2Q8N163 923 aaKnown RBP15.33■□□□□ 0.05
COL6A3-203ENST00000353578 WRNQ14191 1432 aaPredicted RBP eCLIP15.33■□□□□ 0.05
COL6A3-203ENST00000353578 CENPJQ9HC77 1338 aaPredicted RBP15.33■□□□□ 0.04
COL6A3-203ENST00000353578 ANO8Q9HCE9 1232 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-203ENST00000353578 KDM2AQ9Y2K7 1162 aa15.32■□□□□ 0.04
COL6A3-203ENST00000353578 GOLGA2Q08379 1002 aa15.31■□□□□ 0.04
COL6A3-203ENST00000353578 RABEP1Q15276 862 aa15.31■□□□□ 0.04
COL6A3-203ENST00000353578 GOLGA6L10A6NI86 522 aa15.31■□□□□ 0.04
COL6A3-203ENST00000353578 MCM2P49736 904 aa15.3■□□□□ 0.04
COL6A3-203ENST00000353578 R3HCC1Q9Y3T6 440 aaKnown RBP15.3■□□□□ 0.04
COL6A3-203ENST00000353578 ESPNB1AK53 854 aa15.3■□□□□ 0.04
COL6A3-203ENST00000353578 RRP1P56182 461 aaKnown RBP15.29■□□□□ 0.04
COL6A3-203ENST00000353578 LRRFIP1Q32MZ4 808 aaKnown RBP15.29■□□□□ 0.04
COL6A3-203ENST00000353578 ITPRIPQ8IWB1 547 aa15.29■□□□□ 0.04
COL6A3-203ENST00000353578 ZNF592Q92610 1267 aa15.29■□□□□ 0.04
COL6A3-203ENST00000353578 MCM3P25205 808 aa15.29■□□□□ 0.04
COL6A3-203ENST00000353578 LMOD3Q0VAK6 560 aa15.29■□□□□ 0.04
COL6A3-203ENST00000353578 DYNC1I1O14576 645 aa15.28■□□□□ 0.04
COL6A3-203ENST00000353578 CIZ1Q9ULV3 898 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-203ENST00000353578 TPD52L1Q16890 204 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-203ENST00000353578 ZSCAN30Q86W11 494 aa15.27■□□□□ 0.04
COL6A3-203ENST00000353578 IRX3P78415 501 aaPredicted RBP15.27■□□□□ 0.03
COL6A3-203ENST00000353578 SF3A1Q15459 793 aaKnown RBP15.27■□□□□ 0.03
COL6A3-203ENST00000353578 IL27Q8NEV9 243 aa15.27■□□□□ 0.03
COL6A3-203ENST00000353578 BAZ1BQ9UIG0 1483 aaKnown RBP15.27■□□□□ 0.03
COL6A3-203ENST00000353578 FMN1Q68DA7 1419 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 GOLGA6L10A0A0M3HER8 536 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 MYBBP1AQ9BQG0 1328 aaKnown RBP15.26■□□□□ 0.03
COL6A3-203ENST00000353578 H3BQV1 296 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 IFFO2Q5TF58 517 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 CCDC112Q8NEF3 446 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 LUZP1Q86V48 1076 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 SASS6Q6UVJ0 657 aa15.26■□□□□ 0.03
COL6A3-203ENST00000353578 GBP3Q9H0R5 595 aa15.25■□□□□ 0.03
COL6A3-203ENST00000353578 UQCRHLA0A096LP55 91 aa15.25■□□□□ 0.03
COL6A3-203ENST00000353578 UQCRHP07919 91 aa15.25■□□□□ 0.03
COL6A3-203ENST00000353578 HIRIP3Q9BW71 556 aaPredicted RBP15.25■□□□□ 0.03
COL6A3-203ENST00000353578 TTLL5Q6EMB2 1281 aa15.25■□□□□ 0.03
COL6A3-203ENST00000353578 ABCC9O60706 1549 aa15.24■□□□□ 0.03
COL6A3-203ENST00000353578 PDCP20941 246 aa15.24■□□□□ 0.03
COL6A3-203ENST00000353578 SETSIPP0DME0 302 aa15.24■□□□□ 0.03
COL6A3-203ENST00000353578 PIP4K2AP48426 406 aaPredicted RBP15.24■□□□□ 0.03
COL6A3-203ENST00000353578 HSP90AB3PQ58FF7 597 aa15.24■□□□□ 0.03
COL6A3-203ENST00000353578 GTPBP4Q9BZE4 634 aaKnown RBP15.24■□□□□ 0.03
COL6A3-203ENST00000353578 RUFY2Q8WXA3 655 aa15.23■□□□□ 0.03
COL6A3-203ENST00000353578 TIGD1Q96MW7 591 aa15.23■□□□□ 0.03
COL6A3-203ENST00000353578 CGNQ9P2M7 1197 aaKnown RBP15.23■□□□□ 0.03
COL6A3-203ENST00000353578 CHIC2Q9UKJ5 165 aa15.23■□□□□ 0.03
COL6A3-203ENST00000353578 ERLIN2O94905 339 aa15.23■□□□□ 0.03
COL6A3-203ENST00000353578 MICALCLQ6ZW33 695 aa15.22■□□□□ 0.03
COL6A3-203ENST00000353578 E9PSI1 815 aa15.22■□□□□ 0.03
COL6A3-203ENST00000353578 KANK1Q14678 1352 aa15.22■□□□□ 0.03
COL6A3-203ENST00000353578 CCDC47Q96A33 483 aaKnown RBP15.22■□□□□ 0.03
COL6A3-203ENST00000353578 RBM28Q9NW13 759 aaKnown RBP15.22■□□□□ 0.03
COL6A3-203ENST00000353578 P3H3Q8IVL6 736 aa15.22■□□□□ 0.03
COL6A3-203ENST00000353578 TSPY26PQ9H489 355 aa15.21■□□□□ 0.03
COL6A3-203ENST00000353578 CHGAP10645 457 aaKnown RBP15.21■□□□□ 0.03
COL6A3-203ENST00000353578 TRAK2O60296 914 aa15.21■□□□□ 0.03
COL6A3-203ENST00000353578 LUC7LQ9NQ29 371 aaKnown RBP15.21■□□□□ 0.03
COL6A3-203ENST00000353578 PATL2C9JE40 543 aaKnown RBP15.2■□□□□ 0.02
COL6A3-203ENST00000353578 MAP9Q49MG5 647 aa15.2■□□□□ 0.02
COL6A3-203ENST00000353578 CWC22Q9HCG8 908 aaKnown RBP15.2■□□□□ 0.02
COL6A3-203ENST00000353578 U2SURPO15042 1029 aaKnown RBP15.2■□□□□ 0.02
COL6A3-203ENST00000353578 GBP2P32456 591 aaPredicted RBP15.2■□□□□ 0.02
COL6A3-203ENST00000353578 CCDC73Q6ZRK6 1079 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 CT47B1P0C2W7 299 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-203ENST00000353578 IVLP07476 585 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 ZKSCAN1P17029 563 aaPredicted RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms