RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 FRMPD1Q5SYB0 1578 aa13.37□□□□□ -0.27
USP4-202ENST00000351842 KANK1Q14678 1352 aa13.37□□□□□ -0.27
USP4-202ENST00000351842 RICTORQ6R327 1708 aa13.37□□□□□ -0.27
USP4-202ENST00000351842 ABCA6Q8N139 1617 aa13.36□□□□□ -0.27
USP4-202ENST00000351842 ADGRL2O95490 1459 aa13.36□□□□□ -0.27
USP4-202ENST00000351842 MLH3Q9UHC1 1453 aa13.36□□□□□ -0.27
USP4-202ENST00000351842 ADGBQ8N7X0 1667 aa13.35□□□□□ -0.27
USP4-202ENST00000351842 RTEL1-TNFRSF6BF6WH68 1400 aa13.35□□□□□ -0.27
USP4-202ENST00000351842 DUOX2Q9NRD8 1548 aa13.34□□□□□ -0.27
USP4-202ENST00000351842 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
USP4-202ENST00000351842 ATP10AO60312 1499 aa13.34□□□□□ -0.27
USP4-202ENST00000351842 KDM5CP41229 1560 aa13.33□□□□□ -0.28
USP4-202ENST00000351842 INO80Q9ULG1 1556 aaPredicted RBP13.33□□□□□ -0.28
USP4-202ENST00000351842 DIP2CQ9Y2E4 1556 aa13.33□□□□□ -0.28
USP4-202ENST00000351842 ERBINQ96RT1 1412 aa13.3□□□□□ -0.28
USP4-202ENST00000351842 GCC2Q8IWJ2 1684 aa13.3□□□□□ -0.28
USP4-202ENST00000351842 PELP1Q8IZL8 1130 aaKnown RBP13.29□□□□□ -0.28
USP4-202ENST00000351842 HIRIP3Q9BW71 556 aaPredicted RBP13.29□□□□□ -0.28
USP4-202ENST00000351842 PZPP20742 1482 aa13.28□□□□□ -0.28
USP4-202ENST00000351842 BCANQ96GW7 911 aa13.28□□□□□ -0.28
USP4-202ENST00000351842 TONSLQ96HA7 1378 aa13.28□□□□□ -0.28
USP4-202ENST00000351842 FAM135AQ9P2D6 1515 aa13.27□□□□□ -0.28
USP4-202ENST00000351842 PLXNC1O60486 1568 aa13.27□□□□□ -0.29
USP4-202ENST00000351842 MAST1Q9Y2H9 1570 aa13.27□□□□□ -0.29
USP4-202ENST00000351842 DCAF11Q8TEB1 546 aa13.26□□□□□ -0.29
USP4-202ENST00000351842 SIGLEC1Q9BZZ2 1709 aa13.25□□□□□ -0.29
USP4-202ENST00000351842 MAGI2Q86UL8 1455 aa13.25□□□□□ -0.29
USP4-202ENST00000351842 L3MBTL2Q969R5 705 aa13.24□□□□□ -0.29
USP4-202ENST00000351842 ARHGEF40Q8TER5 1519 aa13.24□□□□□ -0.29
USP4-202ENST00000351842 ZMYM4Q5VZL5 1548 aa13.23□□□□□ -0.29
USP4-202ENST00000351842 UGGT1Q9NYU2 1555 aa13.22□□□□□ -0.29
USP4-202ENST00000351842 CCDC144AA2RUR9 1427 aa13.22□□□□□ -0.29
USP4-202ENST00000351842 IDI1Q13907 227 aa13.22□□□□□ -0.29
USP4-202ENST00000351842 ZMYM3Q14202 1370 aa13.22□□□□□ -0.29
USP4-202ENST00000351842 CEP152O94986 1710 aa13.21□□□□□ -0.29
USP4-202ENST00000351842 NPATQ14207 1427 aa13.2□□□□□ -0.3
USP4-202ENST00000351842 ANKRD30BQ9BXX2 1392 aa13.2□□□□□ -0.3
USP4-202ENST00000351842 PPP1R15AO75807 674 aaPredicted RBP13.18□□□□□ -0.3
USP4-202ENST00000351842 POLR3GLQ9BT43 218 aa13.18□□□□□ -0.3
USP4-202ENST00000351842 HSPA2P54652 639 aa13.17□□□□□ -0.3
USP4-202ENST00000351842 ABCC3O15438 1527 aa13.17□□□□□ -0.3
USP4-202ENST00000351842 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
USP4-202ENST00000351842 CLTCQ00610 1675 aaKnown RBP13.16□□□□□ -0.3
USP4-202ENST00000351842 MROH1Q8NDA8 1641 aa13.15□□□□□ -0.3
USP4-202ENST00000351842 PRDM15P57071 1507 aaPredicted RBP13.15□□□□□ -0.3
USP4-202ENST00000351842 PLA2R1Q13018 1463 aa13.14□□□□□ -0.31
USP4-202ENST00000351842 KDM4FA0A1W2PPD8 638 aa13.14□□□□□ -0.31
USP4-202ENST00000351842 CNGB1Q14028 1251 aaPredicted RBP13.14□□□□□ -0.31
USP4-202ENST00000351842 UNC13BO14795 1591 aa13.13□□□□□ -0.31
USP4-202ENST00000351842 KDM5DQ9BY66 1539 aa13.12□□□□□ -0.31
USP4-202ENST00000351842 E9PCH4 1651 aa13.12□□□□□ -0.31
USP4-202ENST00000351842 SAFB2Q14151 953 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP4-202ENST00000351842 STK26Q9P289 416 aa13.12□□□□□ -0.31
USP4-202ENST00000351842 NBPF8Q3BBV2 869 aa13.11□□□□□ -0.31
USP4-202ENST00000351842 MADDQ8WXG6 1647 aa13.11□□□□□ -0.31
USP4-202ENST00000351842 IQGAP3Q86VI3 1631 aa13.11□□□□□ -0.31
USP4-202ENST00000351842 TNRQ92752 1358 aa13.1□□□□□ -0.31
USP4-202ENST00000351842 TMEM132EQ6IEE7 984 aa13.1□□□□□ -0.31
USP4-202ENST00000351842 EIF2AK4Q9P2K8 1649 aaKnown RBP13.1□□□□□ -0.31
USP4-202ENST00000351842 RIMS1Q86UR5 1692 aaKnown RBP13.09□□□□□ -0.31
USP4-202ENST00000351842 EFCAB6Q5THR3 1501 aa13.09□□□□□ -0.31
USP4-202ENST00000351842 NBPF1Q3BBV0 1214 aa13.09□□□□□ -0.31
USP4-202ENST00000351842 SLC26A8Q96RN1 970 aa13.09□□□□□ -0.31
USP4-202ENST00000351842 CLSPNQ9HAW4 1339 aa13.09□□□□□ -0.31
USP4-202ENST00000351842 ADGRF5Q8IZF2 1346 aa13.08□□□□□ -0.32
USP4-202ENST00000351842 AGLP35573 1532 aa13.08□□□□□ -0.32
USP4-202ENST00000351842 ACIN1Q9UKV3 1341 aaKnown RBP13.08□□□□□ -0.32
USP4-202ENST00000351842 DEPDC5O75140 1603 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 CAMSAP1Q5T5Y3 1602 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 CFAP70Q5T0N1 1121 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 RNF17Q9BXT8 1623 aaKnown RBP13.07□□□□□ -0.32
USP4-202ENST00000351842 RBM33Q96EV2 1170 aaKnown RBP13.07□□□□□ -0.32
USP4-202ENST00000351842 SLC52A1Q9NWF4 448 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 TET3O43151 1660 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 TXNDC2Q86VQ3 553 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 PPP6R1Q9UPN7 881 aa13.07□□□□□ -0.32
USP4-202ENST00000351842 RPRD2Q5VT52 1461 aaKnown RBP13.06□□□□□ -0.32
USP4-202ENST00000351842 FER1L4A9Z1Z3 1794 aa13.06□□□□□ -0.32
USP4-202ENST00000351842 CARD11Q9BXL7 1154 aa13.05□□□□□ -0.32
USP4-202ENST00000351842 ERVK-7P63135 1459 aa13.05□□□□□ -0.32
USP4-202ENST00000351842 AEBP2Q6ZN18 517 aaPredicted RBP13.05□□□□□ -0.32
USP4-202ENST00000351842 NOS1P29475 1434 aa13.04□□□□□ -0.32
USP4-202ENST00000351842 CLTCL1P53675 1640 aa13.03□□□□□ -0.32
USP4-202ENST00000351842 BCORL1Q5H9F3 1711 aa13.03□□□□□ -0.32
USP4-202ENST00000351842 TRAK1Q9UPV9 953 aa13.03□□□□□ -0.32
USP4-202ENST00000351842 VWDEQ8N2E2 1590 aa13.03□□□□□ -0.32
USP4-202ENST00000351842 PTPRMP28827 1452 aa13.03□□□□□ -0.32
USP4-202ENST00000351842 CNTLNQ9NXG0 1405 aa13.02□□□□□ -0.32
USP4-202ENST00000351842 LTKP29376 864 aa13.02□□□□□ -0.32
USP4-202ENST00000351842 SPHKAPQ2M3C7 1700 aa13.02□□□□□ -0.33
USP4-202ENST00000351842 EID1Q9Y6B2 187 aa13.01□□□□□ -0.33
USP4-202ENST00000351842 NCKAP5LQ9HCH0 1330 aa13.01□□□□□ -0.33
USP4-202ENST00000351842 REREQ9P2R6 1566 aa13.01□□□□□ -0.33
USP4-202ENST00000351842 ROCK2O75116 1388 aaKnown RBP13.01□□□□□ -0.33
USP4-202ENST00000351842 SYNMO15061 1565 aa13□□□□□ -0.33
USP4-202ENST00000351842 THEMISQ8N1K5 641 aaPredicted RBP13□□□□□ -0.33
USP4-202ENST00000351842 PTPRTO14522 1441 aa13□□□□□ -0.33
USP4-202ENST00000351842 VGFO15240 615 aaPredicted RBP13□□□□□ -0.33
USP4-202ENST00000351842 MYT1Q01538 1121 aa13□□□□□ -0.33
USP4-202ENST00000351842 NUTM2FA1L443 756 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms