RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 ADGBQ8N7X0 1667 aa15.6■□□□□ 0.09
RTN3-201ENST00000338850 CCDC141Q6ZP82 1450 aa15.59■□□□□ 0.09
RTN3-201ENST00000338850 GGT6Q6P531 493 aa15.59■□□□□ 0.09
RTN3-201ENST00000338850 CERKQ8TCT0 537 aa15.59■□□□□ 0.09
RTN3-201ENST00000338850 DMRT2Q9Y5R5 561 aa15.59■□□□□ 0.09
RTN3-201ENST00000338850 DHX29Q7Z478 1369 aaKnown RBP15.58■□□□□ 0.08
RTN3-201ENST00000338850 CLTCQ00610 1675 aaKnown RBP15.57■□□□□ 0.08
RTN3-201ENST00000338850 PPP6R1Q9UPN7 881 aa15.57■□□□□ 0.08
RTN3-201ENST00000338850 FGD6Q6ZV73 1430 aa15.57■□□□□ 0.08
RTN3-201ENST00000338850 RSPH4AQ5TD94 716 aa15.56■□□□□ 0.08
RTN3-201ENST00000338850 MIER1Q8N108 512 aa15.56■□□□□ 0.08
RTN3-201ENST00000338850 GTF3C3Q9Y5Q9 886 aa15.56■□□□□ 0.08
RTN3-201ENST00000338850 PTPRTO14522 1441 aa15.56■□□□□ 0.08
RTN3-201ENST00000338850 PTPRKQ15262 1439 aa15.56■□□□□ 0.08
RTN3-201ENST00000338850 GCC2Q8IWJ2 1684 aa15.55■□□□□ 0.08
RTN3-201ENST00000338850 NCOA1Q15788 1441 aa15.55■□□□□ 0.08
RTN3-201ENST00000338850 ARHGEF5Q12774 1597 aa15.54■□□□□ 0.08
RTN3-201ENST00000338850 HFM1A2PYH4 1435 aa15.53■□□□□ 0.08
RTN3-201ENST00000338850 TCOF1Q13428 1488 aaKnown RBP15.52■□□□□ 0.08
RTN3-201ENST00000338850 PTPN23Q9H3S7 1636 aa15.52■□□□□ 0.08
RTN3-201ENST00000338850 CAMSAP1Q5T5Y3 1602 aa15.51■□□□□ 0.07
RTN3-201ENST00000338850 KIF3BO15066 747 aa15.51■□□□□ 0.07
RTN3-201ENST00000338850 MYOM3Q5VTT5 1437 aa15.51■□□□□ 0.07
RTN3-201ENST00000338850 MYO3AQ8NEV4 1616 aa15.5■□□□□ 0.07
RTN3-201ENST00000338850 TSPY4P0CV99 314 aa15.5■□□□□ 0.07
RTN3-201ENST00000338850 TSPY10P0CW01 314 aa15.5■□□□□ 0.07
RTN3-201ENST00000338850 ZNF142P52746 1687 aaPredicted RBP15.49■□□□□ 0.07
RTN3-201ENST00000338850 MIA2Q96PC5 1412 aa15.49■□□□□ 0.07
RTN3-201ENST00000338850 CEP170BQ9Y4F5 1589 aaPredicted RBP15.49■□□□□ 0.07
RTN3-201ENST00000338850 FAM135AQ9P2D6 1515 aa15.48■□□□□ 0.07
RTN3-201ENST00000338850 KDM5DQ9BY66 1539 aa15.48■□□□□ 0.07
RTN3-201ENST00000338850 PLA2R1Q13018 1463 aa15.47■□□□□ 0.07
RTN3-201ENST00000338850 MAST1Q9Y2H9 1570 aa15.47■□□□□ 0.07
RTN3-201ENST00000338850 NCKAP5LQ9HCH0 1330 aa15.46■□□□□ 0.07
RTN3-201ENST00000338850 LTBP4Q8N2S1 1624 aa15.46■□□□□ 0.06
RTN3-201ENST00000338850 A2ML1A8K2U0 1454 aa15.46■□□□□ 0.06
RTN3-201ENST00000338850 FBXO31Q5XUX0 539 aaPredicted RBP15.45■□□□□ 0.06
RTN3-201ENST00000338850 PZPP20742 1482 aa15.45■□□□□ 0.06
RTN3-201ENST00000338850 WASHC2CQ9Y4E1 1318 aa15.44■□□□□ 0.06
RTN3-201ENST00000338850 TNRQ92752 1358 aa15.44■□□□□ 0.06
RTN3-201ENST00000338850 PKD2Q13563 968 aa15.43■□□□□ 0.06
RTN3-201ENST00000338850 RNF17Q9BXT8 1623 aaKnown RBP15.42■□□□□ 0.06
RTN3-201ENST00000338850 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
RTN3-201ENST00000338850 ABCC3O15438 1527 aa15.39■□□□□ 0.05
RTN3-201ENST00000338850 NAIPQ13075 1403 aa15.39■□□□□ 0.05
RTN3-201ENST00000338850 ZNF335Q9H4Z2 1342 aaPredicted RBP15.39■□□□□ 0.05
RTN3-201ENST00000338850 IQSEC2Q5JU85 1478 aa15.39■□□□□ 0.05
RTN3-201ENST00000338850 EIF2AK4Q9P2K8 1649 aaKnown RBP15.39■□□□□ 0.05
RTN3-201ENST00000338850 ABCC5O15440 1437 aa15.38■□□□□ 0.05
RTN3-201ENST00000338850 MROH1Q8NDA8 1641 aa15.38■□□□□ 0.05
RTN3-201ENST00000338850 SHANK2Q9UPX8 1470 aa15.38■□□□□ 0.05
RTN3-201ENST00000338850 DUOX2Q9NRD8 1548 aa15.38■□□□□ 0.05
RTN3-201ENST00000338850 NLRP1Q9C000 1473 aa15.37■□□□□ 0.05
RTN3-201ENST00000338850 FAM50AQ14320 339 aaKnown RBP15.36■□□□□ 0.05
RTN3-201ENST00000338850 KIF15Q9NS87 1388 aa15.36■□□□□ 0.05
RTN3-201ENST00000338850 ZC3H13Q5T200 1668 aaKnown RBP15.35■□□□□ 0.05
RTN3-201ENST00000338850 CROCC2H7BZ55 1655 aa15.35■□□□□ 0.05
RTN3-201ENST00000338850 NEURL4Q96JN8 1562 aa15.34■□□□□ 0.05
RTN3-201ENST00000338850 DAPK1P53355 1430 aa15.34■□□□□ 0.05
RTN3-201ENST00000338850 SPATA31D1Q6ZQQ2 1576 aa15.33■□□□□ 0.05
RTN3-201ENST00000338850 ERBINQ96RT1 1412 aa15.33■□□□□ 0.04
RTN3-201ENST00000338850 ERVK-7P63135 1459 aa15.33■□□□□ 0.04
RTN3-201ENST00000338850 UGGT1Q9NYU2 1555 aa15.32■□□□□ 0.04
RTN3-201ENST00000338850 THEMISQ8N1K5 641 aaPredicted RBP15.32■□□□□ 0.04
RTN3-201ENST00000338850 RRP7BPQ9NSQ0 103 aa15.32■□□□□ 0.04
RTN3-201ENST00000338850 PPP1R15AO75807 674 aaPredicted RBP15.31■□□□□ 0.04
RTN3-201ENST00000338850 ITGAEP38570 1179 aa15.31■□□□□ 0.04
RTN3-201ENST00000338850 PRDM15P57071 1507 aaPredicted RBP15.31■□□□□ 0.04
RTN3-201ENST00000338850 POLR1AO95602 1720 aaPredicted RBP15.31■□□□□ 0.04
RTN3-201ENST00000338850 ROCK1Q13464 1354 aa15.3■□□□□ 0.04
RTN3-201ENST00000338850 ANKLE2Q86XL3 938 aa15.3■□□□□ 0.04
RTN3-201ENST00000338850 CEP152O94986 1710 aa15.29■□□□□ 0.04
RTN3-201ENST00000338850 YTHDC1Q96MU7 727 aaKnown RBP15.29■□□□□ 0.04
RTN3-201ENST00000338850 ARHGAP31Q2M1Z3 1444 aa15.28■□□□□ 0.04
RTN3-201ENST00000338850 MED14O60244 1454 aa15.27■□□□□ 0.04
RTN3-201ENST00000338850 ANKRD30AQ9BXX3 1397 aa15.27■□□□□ 0.04
RTN3-201ENST00000338850 CCER2I3L3R5 266 aa15.27■□□□□ 0.04
RTN3-201ENST00000338850 CHIC2Q9UKJ5 165 aa15.27■□□□□ 0.04
RTN3-201ENST00000338850 DEPDC5O75140 1603 aa15.27■□□□□ 0.03
RTN3-201ENST00000338850 NPHP4O75161 1426 aaPredicted RBP15.26■□□□□ 0.03
RTN3-201ENST00000338850 TONSLQ96HA7 1378 aa15.26■□□□□ 0.03
RTN3-201ENST00000338850 UBAP1LF5GYI3 381 aa15.26■□□□□ 0.03
RTN3-201ENST00000338850 MYT1Q01538 1121 aa15.26■□□□□ 0.03
RTN3-201ENST00000338850 SENP3Q9H4L4 574 aaPredicted RBP15.26■□□□□ 0.03
RTN3-201ENST00000338850 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.25■□□□□ 0.03
RTN3-201ENST00000338850 VWDEQ8N2E2 1590 aa15.24■□□□□ 0.03
RTN3-201ENST00000338850 CPS1P31327 1500 aa15.24■□□□□ 0.03
RTN3-201ENST00000338850 ADGRL2O95490 1459 aa15.24■□□□□ 0.03
RTN3-201ENST00000338850 KANK1Q14678 1352 aa15.24■□□□□ 0.03
RTN3-201ENST00000338850 LMTK2Q8IWU2 1503 aa15.22■□□□□ 0.03
RTN3-201ENST00000338850 UBR1Q8IWV7 1749 aa15.22■□□□□ 0.03
RTN3-201ENST00000338850 SIN3AQ96ST3 1273 aa15.21■□□□□ 0.03
RTN3-201ENST00000338850 IQGAP1P46940 1657 aa15.21■□□□□ 0.03
RTN3-201ENST00000338850 ARHGAP23Q9P227 1491 aa15.2■□□□□ 0.02
RTN3-201ENST00000338850 CFAP65Q6ZU64 1925 aaKnown RBP15.2■□□□□ 0.02
RTN3-201ENST00000338850 DISP3Q9P2K9 1392 aa15.2■□□□□ 0.02
RTN3-201ENST00000338850 SLIT1O75093 1534 aa15.19■□□□□ 0.02
RTN3-201ENST00000338850 SCAF11Q99590 1463 aaKnown RBP15.19■□□□□ 0.02
RTN3-201ENST00000338850 LTKP29376 864 aa15.18■□□□□ 0.02
RTN3-201ENST00000338850 EFCAB6Q5THR3 1501 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms