RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RNF17Q9BXT8 1623 aaKnown RBP24.14■■□□□ 1.46
CCDC28A-201ENST00000332797 PLPPR3Q6T4P5 718 aa24.14■■□□□ 1.46
CCDC28A-201ENST00000332797 CLTCQ00610 1675 aaKnown RBP24.13■■□□□ 1.45
CCDC28A-201ENST00000332797 CNTLNQ9NXG0 1405 aa24.12■■□□□ 1.45
CCDC28A-201ENST00000332797 ANKRD50Q9ULJ7 1429 aa24.1■■□□□ 1.45
CCDC28A-201ENST00000332797 PPP6R1Q9UPN7 881 aa24.09■■□□□ 1.45
CCDC28A-201ENST00000332797 MROH2AA6NES4 1674 aa24.09■■□□□ 1.45
CCDC28A-201ENST00000332797 KDM5DQ9BY66 1539 aa24.09■■□□□ 1.45
CCDC28A-201ENST00000332797 MROH1Q8NDA8 1641 aa24.08■■□□□ 1.45
CCDC28A-201ENST00000332797 C3P01024 1663 aa24.08■■□□□ 1.44
CCDC28A-201ENST00000332797 FAM135AQ9P2D6 1515 aa24.07■■□□□ 1.44
CCDC28A-201ENST00000332797 CEBPAP49715 358 aaPredicted RBP24.07■■□□□ 1.44
CCDC28A-201ENST00000332797 DEPDC5O75140 1603 aa24.06■■□□□ 1.44
CCDC28A-201ENST00000332797 WASHC2CQ9Y4E1 1318 aa24.06■■□□□ 1.44
CCDC28A-201ENST00000332797 PRDM15P57071 1507 aaPredicted RBP24.05■■□□□ 1.44
CCDC28A-201ENST00000332797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.03■■□□□ 1.44
CCDC28A-201ENST00000332797 ZMYM3Q14202 1370 aa24.03■■□□□ 1.44
CCDC28A-201ENST00000332797 ZC3H13Q5T200 1668 aaKnown RBP24.03■■□□□ 1.44
CCDC28A-201ENST00000332797 ABCC3O15438 1527 aa24.02■■□□□ 1.44
CCDC28A-201ENST00000332797 CEP152O94986 1710 aa24.01■■□□□ 1.43
CCDC28A-201ENST00000332797 GCC2Q8IWJ2 1684 aa24■■□□□ 1.43
CCDC28A-201ENST00000332797 KANK1Q14678 1352 aa23.99■■□□□ 1.43
CCDC28A-201ENST00000332797 NAIPQ13075 1403 aa23.98■■□□□ 1.43
CCDC28A-201ENST00000332797 UNC13BO14795 1591 aa23.97■■□□□ 1.43
CCDC28A-201ENST00000332797 HFM1A2PYH4 1435 aa23.96■■□□□ 1.43
CCDC28A-201ENST00000332797 CAMSAP1Q5T5Y3 1602 aa23.96■■□□□ 1.43
CCDC28A-201ENST00000332797 VWDEQ8N2E2 1590 aa23.95■■□□□ 1.42
CCDC28A-201ENST00000332797 PZPP20742 1482 aa23.93■■□□□ 1.42
CCDC28A-201ENST00000332797 NPATQ14207 1427 aa23.92■■□□□ 1.42
CCDC28A-201ENST00000332797 PREX1Q8TCU6 1659 aa23.91■■□□□ 1.42
CCDC28A-201ENST00000332797 LMTK2Q8IWU2 1503 aa23.91■■□□□ 1.42
CCDC28A-201ENST00000332797 LMTK3Q96Q04 1460 aa23.88■■□□□ 1.41
CCDC28A-201ENST00000332797 FBXO31Q5XUX0 539 aaPredicted RBP23.87■■□□□ 1.41
CCDC28A-201ENST00000332797 UHRF1BP1Q6BDS2 1440 aa23.87■■□□□ 1.41
CCDC28A-201ENST00000332797 IQGAP3Q86VI3 1631 aa23.87■■□□□ 1.41
CCDC28A-201ENST00000332797 NUP155O75694 1391 aa23.86■■□□□ 1.41
CCDC28A-201ENST00000332797 EFCAB6Q5THR3 1501 aa23.86■■□□□ 1.41
CCDC28A-201ENST00000332797 ARHGAP31Q2M1Z3 1444 aa23.85■■□□□ 1.41
CCDC28A-201ENST00000332797 SETD1BQ9UPS6 1966 aaKnown RBP23.85■■□□□ 1.41
CCDC28A-201ENST00000332797 MYO3AQ8NEV4 1616 aa23.84■■□□□ 1.41
CCDC28A-201ENST00000332797 TET3O43151 1660 aa23.84■■□□□ 1.41
CCDC28A-201ENST00000332797 TNRQ92752 1358 aa23.84■■□□□ 1.41
CCDC28A-201ENST00000332797 ERVK-7P63135 1459 aa23.83■■□□□ 1.41
CCDC28A-201ENST00000332797 SPATA31D1Q6ZQQ2 1576 aa23.81■■□□□ 1.4
CCDC28A-201ENST00000332797 CFAP65Q6ZU64 1925 aaKnown RBP23.8■■□□□ 1.4
CCDC28A-201ENST00000332797 SETD5Q9C0A6 1442 aa23.79■■□□□ 1.4
CCDC28A-201ENST00000332797 TRIM52Q96A61 297 aa23.78■■□□□ 1.4
CCDC28A-201ENST00000332797 ZNF142P52746 1687 aaPredicted RBP23.77■■□□□ 1.4
CCDC28A-201ENST00000332797 HSPA2P54652 639 aa23.77■■□□□ 1.4
CCDC28A-201ENST00000332797 CEP170BQ9Y4F5 1589 aaPredicted RBP23.76■■□□□ 1.39
CCDC28A-201ENST00000332797 RPRD2Q5VT52 1461 aaKnown RBP23.76■■□□□ 1.39
CCDC28A-201ENST00000332797 E9PCH4 1651 aa23.76■■□□□ 1.39
CCDC28A-201ENST00000332797 A2ML1A8K2U0 1454 aa23.73■■□□□ 1.39
CCDC28A-201ENST00000332797 NLRP1Q9C000 1473 aa23.73■■□□□ 1.39
CCDC28A-201ENST00000332797 RAB3GAP2Q9H2M9 1393 aa23.73■■□□□ 1.39
CCDC28A-201ENST00000332797 SYNMO15061 1565 aa23.71■■□□□ 1.39
CCDC28A-201ENST00000332797 NOS1P29475 1434 aa23.71■■□□□ 1.39
CCDC28A-201ENST00000332797 SLC4A1APQ9BWU0 796 aaKnown RBP23.67■■□□□ 1.38
CCDC28A-201ENST00000332797 UGGT1Q9NYU2 1555 aa23.66■■□□□ 1.38
CCDC28A-201ENST00000332797 TRIM26Q12899 539 aaPredicted RBP23.64■■□□□ 1.38
CCDC28A-201ENST00000332797 ACIN1Q9UKV3 1341 aaKnown RBP23.64■■□□□ 1.37
CCDC28A-201ENST00000332797 PIK3C2BO00750 1634 aa23.64■■□□□ 1.37
CCDC28A-201ENST00000332797 PKD2Q13563 968 aa23.63■■□□□ 1.37
CCDC28A-201ENST00000332797 SPHKAPQ2M3C7 1700 aa23.62■■□□□ 1.37
CCDC28A-201ENST00000332797 UBR1Q8IWV7 1749 aa23.61■■□□□ 1.37
CCDC28A-201ENST00000332797 IDI1Q13907 227 aa23.6■■□□□ 1.37
CCDC28A-201ENST00000332797 SLC52A1Q9NWF4 448 aa23.6■■□□□ 1.37
CCDC28A-201ENST00000332797 THEMISQ8N1K5 641 aaPredicted RBP23.59■■□□□ 1.37
CCDC28A-201ENST00000332797 MPHOSPH9Q99550 1183 aa23.59■■□□□ 1.37
CCDC28A-201ENST00000332797 PLA2R1Q13018 1463 aa23.59■■□□□ 1.37
CCDC28A-201ENST00000332797 STRCQ7RTU9 1775 aa23.59■■□□□ 1.37
CCDC28A-201ENST00000332797 PTPRTO14522 1441 aa23.57■■□□□ 1.36
CCDC28A-201ENST00000332797 STAG3Q9UJ98 1225 aa23.57■■□□□ 1.36
CCDC28A-201ENST00000332797 ADGRB3O60242 1522 aa23.57■■□□□ 1.36
CCDC28A-201ENST00000332797 HRCP23327 699 aa23.56■■□□□ 1.36
CCDC28A-201ENST00000332797 TRPM2O94759 1503 aa23.55■■□□□ 1.36
CCDC28A-201ENST00000332797 KDM5AP29375 1690 aaKnown RBP23.55■■□□□ 1.36
CCDC28A-201ENST00000332797 FOXD1Q16676 465 aa23.55■■□□□ 1.36
CCDC28A-201ENST00000332797 NCKAP5LQ9HCH0 1330 aa23.53■■□□□ 1.36
CCDC28A-201ENST00000332797 POLR1AO95602 1720 aaPredicted RBP23.52■■□□□ 1.36
CCDC28A-201ENST00000332797 CLTCL1P53675 1640 aa23.51■■□□□ 1.35
CCDC28A-201ENST00000332797 CHGAP10645 457 aaKnown RBP23.5■■□□□ 1.35
CCDC28A-201ENST00000332797 TMEM131LA2VDJ0 1609 aa23.5■■□□□ 1.35
CCDC28A-201ENST00000332797 MYO5BQ9ULV0 1848 aa23.49■■□□□ 1.35
CCDC28A-201ENST00000332797 SLIT1O75093 1534 aa23.49■■□□□ 1.35
CCDC28A-201ENST00000332797 ANKLE2Q86XL3 938 aa23.49■■□□□ 1.35
CCDC28A-201ENST00000332797 ARHGAP23Q9P227 1491 aa23.48■■□□□ 1.35
CCDC28A-201ENST00000332797 TMEM2Q9UHN6 1383 aa23.47■■□□□ 1.35
CCDC28A-201ENST00000332797 DMRT2Q9Y5R5 561 aa23.47■■□□□ 1.35
CCDC28A-201ENST00000332797 NEURL4Q96JN8 1562 aa23.46■■□□□ 1.35
CCDC28A-201ENST00000332797 SCAF11Q99590 1463 aaKnown RBP23.44■■□□□ 1.34
CCDC28A-201ENST00000332797 EID1Q9Y6B2 187 aa23.43■■□□□ 1.34
CCDC28A-201ENST00000332797 KIF1BO60333 1816 aa23.43■■□□□ 1.34
CCDC28A-201ENST00000332797 CCDC144AA2RUR9 1427 aa23.42■■□□□ 1.34
CCDC28A-201ENST00000332797 LTKP29376 864 aa23.42■■□□□ 1.34
CCDC28A-201ENST00000332797 TXNDC2Q86VQ3 553 aa23.42■■□□□ 1.34
CCDC28A-201ENST00000332797 NPHP4O75161 1426 aaPredicted RBP23.4■■□□□ 1.34
CCDC28A-201ENST00000332797 RIMS2Q9UQ26 1411 aa23.4■■□□□ 1.34
CCDC28A-201ENST00000332797 MED14O60244 1454 aa23.4■■□□□ 1.34
CCDC28A-201ENST00000332797 IQGAP1P46940 1657 aa23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms