RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TAF7LQ5H9L4 462 aa12.84□□□□□ -0.35
CHD3-201ENST00000330494 CALD1Q05682 793 aaKnown RBP12.84□□□□□ -0.35
CHD3-201ENST00000330494 GNL2Q13823 731 aaKnown RBP12.84□□□□□ -0.35
CHD3-201ENST00000330494 GORABQ5T7V8 394 aa12.83□□□□□ -0.36
CHD3-201ENST00000330494 RWDD1Q9H446 243 aaPredicted RBP12.83□□□□□ -0.36
CHD3-201ENST00000330494 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
CHD3-201ENST00000330494 DHX57Q6P158 1386 aaKnown RBP12.82□□□□□ -0.36
CHD3-201ENST00000330494 NGEFQ8N5V2 710 aa12.82□□□□□ -0.36
CHD3-201ENST00000330494 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
CHD3-201ENST00000330494 DRC7Q8IY82 874 aa12.81□□□□□ -0.36
CHD3-201ENST00000330494 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.367e-9■■■■■ 40.5
CHD3-201ENST00000330494 RSPH4AQ5TD94 716 aa12.8□□□□□ -0.36
CHD3-201ENST00000330494 CENPJQ9HC77 1338 aaPredicted RBP12.8□□□□□ -0.36
CHD3-201ENST00000330494 NLRP13Q86W25 1043 aa12.8□□□□□ -0.36
CHD3-201ENST00000330494 TCERG1O14776 1098 aaKnown RBP12.79□□□□□ -0.36
CHD3-201ENST00000330494 ARID3AQ99856 593 aa12.79□□□□□ -0.36
CHD3-201ENST00000330494 KIF15Q9NS87 1388 aa12.78□□□□□ -0.36
CHD3-201ENST00000330494 FOXD4L5Q5VV16 416 aaPredicted RBP12.78□□□□□ -0.36
CHD3-201ENST00000330494 FOXD4L4Q8WXT5 416 aaPredicted RBP12.78□□□□□ -0.36
CHD3-201ENST00000330494 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
CHD3-201ENST00000330494 FAM69CQ0P6D2 419 aa12.78□□□□□ -0.36
CHD3-201ENST00000330494 PMFBP1Q8TBY8 1022 aa12.77□□□□□ -0.37
CHD3-201ENST00000330494 USP47Q96K76 1375 aa12.77□□□□□ -0.37
CHD3-201ENST00000330494 EVA1CP58658 441 aa12.77□□□□□ -0.37
CHD3-201ENST00000330494 HSP90B1P14625 803 aaKnown RBP12.77□□□□□ -0.37
CHD3-201ENST00000330494 COG3Q96JB2 828 aa12.76□□□□□ -0.37
CHD3-201ENST00000330494 MYBBP1AQ9BQG0 1328 aaKnown RBP12.76□□□□□ -0.37
CHD3-201ENST00000330494 GOLGA6L6A8MZA4 724 aa12.75□□□□□ -0.37
CHD3-201ENST00000330494 EIF2S2P20042 333 aaKnown RBP12.75□□□□□ -0.37
CHD3-201ENST00000330494 NUTM2GQ5VZR2 741 aa12.74□□□□□ -0.37
CHD3-201ENST00000330494 IGF1RP08069 1367 aa12.74□□□□□ -0.37
CHD3-201ENST00000330494 EVC2Q86UK5 1308 aa12.74□□□□□ -0.37
CHD3-201ENST00000330494 G3V3G9 751 aa12.73□□□□□ -0.37
CHD3-201ENST00000330494 VGFO15240 615 aaPredicted RBP12.73□□□□□ -0.37
CHD3-201ENST00000330494 DCAF8Q5TAQ9 597 aa12.73□□□□□ -0.37
CHD3-201ENST00000330494 GTF2E1P29083 439 aaPredicted RBP12.73□□□□□ -0.37
CHD3-201ENST00000330494 GPATCH3Q96I76 525 aa12.73□□□□□ -0.37
CHD3-201ENST00000330494 APAF1O14727 1248 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 FRAT2O75474 233 aaPredicted RBP12.72□□□□□ -0.37
CHD3-201ENST00000330494 RILPL2Q969X0 211 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 CGNL1Q0VF96 1302 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 C1orf141Q5JVX7 400 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 SYTL4Q96C24 671 aaPredicted RBP12.72□□□□□ -0.37
CHD3-201ENST00000330494 TMX4Q9H1E5 349 aaPredicted RBP12.72□□□□□ -0.37
CHD3-201ENST00000330494 TMEM132EQ6IEE7 984 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 CRBNQ96SW2 442 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 TOMM22Q9NS69 142 aa12.72□□□□□ -0.37
CHD3-201ENST00000330494 ANKRD45Q5TZF3 282 aa12.71□□□□□ -0.37
CHD3-201ENST00000330494 LMOD3Q0VAK6 560 aa12.71□□□□□ -0.38
CHD3-201ENST00000330494 FOXD4L6Q3SYB3 417 aaPredicted RBP12.71□□□□□ -0.38
CHD3-201ENST00000330494 FOXD4L3Q6VB84 417 aaPredicted RBP12.71□□□□□ -0.38
CHD3-201ENST00000330494 EXOC6Q8TAG9 804 aa12.71□□□□□ -0.38
CHD3-201ENST00000330494 HMMRO75330 724 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 SLC4A3P48751 1232 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 PSME1Q06323 249 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 HMOX1P09601 288 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 UACAQ9BZF9 1416 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 MSH5O43196 834 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 COG6Q9Y2V7 657 aa12.7□□□□□ -0.38
CHD3-201ENST00000330494 MSNP26038 577 aaKnown RBP12.7□□□□□ -0.38
CHD3-201ENST00000330494 PRKRIP1Q9H875 184 aaPredicted RBP12.7□□□□□ -0.38
CHD3-201ENST00000330494 NESP48681 1621 aa12.69□□□□□ -0.38
CHD3-201ENST00000330494 ANO8Q9HCE9 1232 aaPredicted RBP12.69□□□□□ -0.38
CHD3-201ENST00000330494 CABP2Q9NPB3 220 aa12.69□□□□□ -0.38
CHD3-201ENST00000330494 TSHZ2Q9NRE2 1034 aa12.69□□□□□ -0.38
CHD3-201ENST00000330494 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
CHD3-201ENST00000330494 CREBRFQ8IUR6 639 aa12.68□□□□□ -0.38
CHD3-201ENST00000330494 ARHGAP5Q13017 1502 aa12.67□□□□□ -0.38
CHD3-201ENST00000330494 GBP4Q96PP9 640 aa12.67□□□□□ -0.38
CHD3-201ENST00000330494 PHLDB1Q86UU1 1377 aa12.67□□□□□ -0.38
CHD3-201ENST00000330494 TEFQ10587 303 aa12.67□□□□□ -0.38
CHD3-201ENST00000330494 KIF21BO75037 1637 aa12.67□□□□□ -0.38
CHD3-201ENST00000330494 NRDCO43847 1150 aa12.66□□□□□ -0.38
CHD3-201ENST00000330494 RIPK4P57078 832 aa12.66□□□□□ -0.38
CHD3-201ENST00000330494 L1TD1Q5T7N2 865 aaKnown RBP12.66□□□□□ -0.38
CHD3-201ENST00000330494 AFAP1Q8N556 730 aa12.66□□□□□ -0.38
CHD3-201ENST00000330494 FGD6Q6ZV73 1430 aa12.66□□□□□ -0.38
CHD3-201ENST00000330494 GGNBP2Q9H3C7 697 aa12.65□□□□□ -0.38
CHD3-201ENST00000330494 DIAPH1O60610 1272 aaKnown RBP12.65□□□□□ -0.39
CHD3-201ENST00000330494 MYOM3Q5VTT5 1437 aa12.64□□□□□ -0.39
CHD3-201ENST00000330494 PDE3BQ13370 1112 aa12.64□□□□□ -0.39
CHD3-201ENST00000330494 RRP1P56182 461 aaKnown RBP12.64□□□□□ -0.39
CHD3-201ENST00000330494 ZNF428Q96B54 188 aa12.63□□□□□ -0.39
CHD3-201ENST00000330494 LRRC9Q6ZRR7 1453 aa12.63□□□□□ -0.39
CHD3-201ENST00000330494 PDE4CQ08493 712 aa12.63□□□□□ -0.39
CHD3-201ENST00000330494 CHAF1AQ13111 956 aaPredicted RBP12.63□□□□□ -0.39
CHD3-201ENST00000330494 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
CHD3-201ENST00000330494 VSIG10Q8N0Z9 540 aa12.63□□□□□ -0.39
CHD3-201ENST00000330494 TTC5Q8N0Z6 440 aa12.62□□□□□ -0.39
CHD3-201ENST00000330494 E9PSI1 815 aa12.62□□□□□ -0.39
CHD3-201ENST00000330494 MEX3CQ5U5Q3 659 aaKnown RBP12.62□□□□□ -0.39
CHD3-201ENST00000330494 ZKSCAN2Q63HK3 967 aa12.62□□□□□ -0.39
CHD3-201ENST00000330494 C9orf78Q9NZ63 289 aaPredicted RBP12.62□□□□□ -0.39
CHD3-201ENST00000330494 CUX1P39880 1505 aa12.62□□□□□ -0.39
CHD3-201ENST00000330494 TNNT3P45378 269 aaPredicted RBP12.62□□□□□ -0.39
CHD3-201ENST00000330494 VPS53Q5VIR6 699 aa12.61□□□□□ -0.39
CHD3-201ENST00000330494 RASSF8Q8NHQ8 419 aa12.61□□□□□ -0.39
CHD3-201ENST00000330494 IPO9Q96P70 1041 aaKnown RBP12.61□□□□□ -0.39
CHD3-201ENST00000330494 NCOA2Q15596 1464 aa12.61□□□□□ -0.39
CHD3-201ENST00000330494 CHMP4AQ9BY43 222 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 159.7 ms