RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ABCC5O15440 1437 aa24.86■■□□□ 1.57
HDDC2-201ENST00000318787 CHIC2Q9UKJ5 165 aa24.83■■□□□ 1.57
HDDC2-201ENST00000318787 SHANK2Q9UPX8 1470 aa24.83■■□□□ 1.57
HDDC2-201ENST00000318787 EIF2AK4Q9P2K8 1649 aaKnown RBP24.83■■□□□ 1.57
HDDC2-201ENST00000318787 KDM5DQ9BY66 1539 aa24.82■■□□□ 1.56
HDDC2-201ENST00000318787 DUOX2Q9NRD8 1548 aa24.82■■□□□ 1.56
HDDC2-201ENST00000318787 RRP7BPQ9NSQ0 103 aa24.81■■□□□ 1.56
HDDC2-201ENST00000318787 WASHC2CQ9Y4E1 1318 aa24.81■■□□□ 1.56
HDDC2-201ENST00000318787 KIF15Q9NS87 1388 aa24.8■■□□□ 1.56
HDDC2-201ENST00000318787 PPP6R1Q9UPN7 881 aa24.8■■□□□ 1.56
HDDC2-201ENST00000318787 MYO3AQ8NEV4 1616 aa24.8■■□□□ 1.56
HDDC2-201ENST00000318787 RNF17Q9BXT8 1623 aaKnown RBP24.8■■□□□ 1.56
HDDC2-201ENST00000318787 CEP152O94986 1710 aa24.78■■□□□ 1.56
HDDC2-201ENST00000318787 NPATQ14207 1427 aa24.78■■□□□ 1.56
HDDC2-201ENST00000318787 PTPRKQ15262 1439 aa24.75■■□□□ 1.55
HDDC2-201ENST00000318787 ZC3H13Q5T200 1668 aaKnown RBP24.75■■□□□ 1.55
HDDC2-201ENST00000318787 FAM135AQ9P2D6 1515 aa24.74■■□□□ 1.55
HDDC2-201ENST00000318787 STRCQ7RTU9 1775 aa24.74■■□□□ 1.55
HDDC2-201ENST00000318787 ANKRD30AQ9BXX3 1397 aa24.74■■□□□ 1.55
HDDC2-201ENST00000318787 CFAP65Q6ZU64 1925 aaKnown RBP24.73■■□□□ 1.55
HDDC2-201ENST00000318787 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
HDDC2-201ENST00000318787 ZNF142P52746 1687 aaPredicted RBP24.71■■□□□ 1.55
HDDC2-201ENST00000318787 ERBINQ96RT1 1412 aa24.7■■□□□ 1.54
HDDC2-201ENST00000318787 CEP170BQ9Y4F5 1589 aaPredicted RBP24.7■■□□□ 1.54
HDDC2-201ENST00000318787 FBXO31Q5XUX0 539 aaPredicted RBP24.69■■□□□ 1.54
HDDC2-201ENST00000318787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.69■■□□□ 1.542e-7■■■■□ 19.8
HDDC2-201ENST00000318787 ABCC3O15438 1527 aa24.69■■□□□ 1.54
HDDC2-201ENST00000318787 PZPP20742 1482 aa24.69■■□□□ 1.54
HDDC2-201ENST00000318787 CAMSAP1Q5T5Y3 1602 aa24.69■■□□□ 1.54
HDDC2-201ENST00000318787 ITGAEP38570 1179 aa24.67■■□□□ 1.54
HDDC2-201ENST00000318787 TNRQ92752 1358 aa24.65■■□□□ 1.54
HDDC2-201ENST00000318787 NCOA1Q15788 1441 aa24.65■■□□□ 1.54
HDDC2-201ENST00000318787 PRDM15P57071 1507 aaPredicted RBP24.65■■□□□ 1.54
HDDC2-201ENST00000318787 DEPDC5O75140 1603 aa24.63■■□□□ 1.53
HDDC2-201ENST00000318787 ADGRL2O95490 1459 aa24.63■■□□□ 1.53
HDDC2-201ENST00000318787 FBXO41Q8TF61 875 aa24.63■■□□□ 1.53
HDDC2-201ENST00000318787 KANK1Q14678 1352 aa24.6■■□□□ 1.53
HDDC2-201ENST00000318787 A2ML1A8K2U0 1454 aa24.59■■□□□ 1.53
HDDC2-201ENST00000318787 DMRT2Q9Y5R5 561 aa24.59■■□□□ 1.53
HDDC2-201ENST00000318787 ANKRD50Q9ULJ7 1429 aa24.56■■□□□ 1.52
HDDC2-201ENST00000318787 NCKAP5LQ9HCH0 1330 aa24.56■■□□□ 1.52
HDDC2-201ENST00000318787 ERVK-7P63135 1459 aa24.54■■□□□ 1.52
HDDC2-201ENST00000318787 SPATA31D1Q6ZQQ2 1576 aa24.54■■□□□ 1.52
HDDC2-201ENST00000318787 POLR1AO95602 1720 aaPredicted RBP24.54■■□□□ 1.52
HDDC2-201ENST00000318787 CERKQ8TCT0 537 aa24.53■■□□□ 1.52
HDDC2-201ENST00000318787 UGGT1Q9NYU2 1555 aa24.52■■□□□ 1.52
HDDC2-201ENST00000318787 NLRP1Q9C000 1473 aa24.51■■□□□ 1.51
HDDC2-201ENST00000318787 PLA2R1Q13018 1463 aa24.5■■□□□ 1.51
HDDC2-201ENST00000318787 PTPRTO14522 1441 aa24.5■■□□□ 1.51
HDDC2-201ENST00000318787 VWDEQ8N2E2 1590 aa24.47■■□□□ 1.51
HDDC2-201ENST00000318787 ROCK1Q13464 1354 aa24.46■■□□□ 1.51
HDDC2-201ENST00000318787 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.46■■□□□ 1.512e-9■□□□□ 11.3
HDDC2-201ENST00000318787 PKD2Q13563 968 aa24.45■■□□□ 1.5
HDDC2-201ENST00000318787 RRBP1Q9P2E9 1410 aaKnown RBP24.45■■□□□ 1.5
HDDC2-201ENST00000318787 EFCAB6Q5THR3 1501 aa24.44■■□□□ 1.5
HDDC2-201ENST00000318787 ARHGAP31Q2M1Z3 1444 aa24.44■■□□□ 1.5
HDDC2-201ENST00000318787 UNC13BO14795 1591 aa24.44■■□□□ 1.5
HDDC2-201ENST00000318787 UBR1Q8IWV7 1749 aa24.44■■□□□ 1.5
HDDC2-201ENST00000318787 LMTK2Q8IWU2 1503 aa24.44■■□□□ 1.5
HDDC2-201ENST00000318787 THEMISQ8N1K5 641 aaPredicted RBP24.43■■□□□ 1.5
HDDC2-201ENST00000318787 TET3O43151 1660 aa24.41■■□□□ 1.5
HDDC2-201ENST00000318787 GCC2Q8IWJ2 1684 aa24.41■■□□□ 1.5
HDDC2-201ENST00000318787 PIK3C2BO00750 1634 aa24.41■■□□□ 1.5
HDDC2-201ENST00000318787 NEURL4Q96JN8 1562 aa24.39■■□□□ 1.49
HDDC2-201ENST00000318787 ANKLE2Q86XL3 938 aa24.38■■□□□ 1.49
HDDC2-201ENST00000318787 STAG3Q9UJ98 1225 aa24.38■■□□□ 1.49
HDDC2-201ENST00000318787 SYNMO15061 1565 aa24.37■■□□□ 1.49
HDDC2-201ENST00000318787 IQGAP3Q86VI3 1631 aa24.35■■□□□ 1.49
HDDC2-201ENST00000318787 ZNF335Q9H4Z2 1342 aaPredicted RBP24.35■■□□□ 1.49
HDDC2-201ENST00000318787 E9PCH4 1651 aa24.34■■□□□ 1.49
HDDC2-201ENST00000318787 IQGAP1P46940 1657 aa24.34■■□□□ 1.49
HDDC2-201ENST00000318787 LTBP4Q8N2S1 1624 aa24.33■■□□□ 1.49
HDDC2-201ENST00000318787 NUP155O75694 1391 aa24.32■■□□□ 1.48
HDDC2-201ENST00000318787 RPRD2Q5VT52 1461 aaKnown RBP24.3■■□□□ 1.48
HDDC2-201ENST00000318787 NPHP4O75161 1426 aaPredicted RBP24.3■■□□□ 1.48
HDDC2-201ENST00000318787 MYO5BQ9ULV0 1848 aa24.29■■□□□ 1.48
HDDC2-201ENST00000318787 NOS1P29475 1434 aa24.28■■□□□ 1.48
HDDC2-201ENST00000318787 IDI1Q13907 227 aa24.28■■□□□ 1.48
HDDC2-201ENST00000318787 KDM5AP29375 1690 aaKnown RBP24.26■■□□□ 1.47
HDDC2-201ENST00000318787 ADGRB3O60242 1522 aa24.26■■□□□ 1.47
HDDC2-201ENST00000318787 SCAF11Q99590 1463 aaKnown RBP24.25■■□□□ 1.47
HDDC2-201ENST00000318787 NAIPQ13075 1403 aa24.24■■□□□ 1.47
HDDC2-201ENST00000318787 TXNDC2Q86VQ3 553 aa24.24■■□□□ 1.47
HDDC2-201ENST00000318787 EID1Q9Y6B2 187 aa24.24■■□□□ 1.47
HDDC2-201ENST00000318787 MED14O60244 1454 aa24.24■■□□□ 1.47
HDDC2-201ENST00000318787 SLIT1O75093 1534 aa24.23■■□□□ 1.47
HDDC2-201ENST00000318787 CHGAP10645 457 aaKnown RBP24.23■■□□□ 1.47
HDDC2-201ENST00000318787 ARHGAP23Q9P227 1491 aa24.21■■□□□ 1.47
HDDC2-201ENST00000318787 SLC52A1Q9NWF4 448 aa24.21■■□□□ 1.47
HDDC2-201ENST00000318787 LTKP29376 864 aa24.2■■□□□ 1.46
HDDC2-201ENST00000318787 TRIM52Q96A61 297 aa24.2■■□□□ 1.46
HDDC2-201ENST00000318787 SPHKAPQ2M3C7 1700 aa24.2■■□□□ 1.46
HDDC2-201ENST00000318787 TMEM2Q9UHN6 1383 aa24.2■■□□□ 1.46
HDDC2-201ENST00000318787 HFM1A2PYH4 1435 aa24.18■■□□□ 1.46
HDDC2-201ENST00000318787 TMEM131LA2VDJ0 1609 aa24.16■■□□□ 1.46
HDDC2-201ENST00000318787 IQSEC2Q5JU85 1478 aa24.16■■□□□ 1.46
HDDC2-201ENST00000318787 BCANQ96GW7 911 aa24.16■■□□□ 1.46
HDDC2-201ENST00000318787 STRCP1A6NGW2 1772 aa24.15■■□□□ 1.46
HDDC2-201ENST00000318787 CPS1P31327 1500 aa24.14■■□□□ 1.46
HDDC2-201ENST00000318787 ADRA2BP18089 450 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms