RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 C3P01024 1663 aa16.72■□□□□ 0.27
CSPG4P1Y-201ENST00000306641 NCOA1Q15788 1441 aa16.72■□□□□ 0.27
CSPG4P1Y-201ENST00000306641 FAM135AQ9P2D6 1515 aa16.72■□□□□ 0.27
CSPG4P1Y-201ENST00000306641 KIF3BO15066 747 aa16.72■□□□□ 0.27
CSPG4P1Y-201ENST00000306641 GGT6Q6P531 493 aa16.72■□□□□ 0.27
CSPG4P1Y-201ENST00000306641 KDM5DQ9BY66 1539 aa16.7■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 ROCK1Q13464 1354 aa16.7■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 CEP152O94986 1710 aa16.7■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 PTPRKQ15262 1439 aa16.7■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 GCC2Q8IWJ2 1684 aa16.69■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 DEPDC5O75140 1603 aa16.69■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 PRDM15P57071 1507 aaPredicted RBP16.67■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 PLPPR3Q6T4P5 718 aa16.67■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 MROH1Q8NDA8 1641 aa16.67■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 ANKRD50Q9ULJ7 1429 aa16.66■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 PREX1Q8TCU6 1659 aa16.65■□□□□ 0.26
CSPG4P1Y-201ENST00000306641 CAMSAP1Q5T5Y3 1602 aa16.64■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 SETD1BQ9UPS6 1966 aaKnown RBP16.64■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 KANK1Q14678 1352 aa16.63■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 ABCC3O15438 1527 aa16.62■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 UNC13BO14795 1591 aa16.62■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 WASHC2CQ9Y4E1 1318 aa16.62■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 CFAP65Q6ZU64 1925 aaKnown RBP16.6■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 ZMYM3Q14202 1370 aa16.6■□□□□ 0.25
CSPG4P1Y-201ENST00000306641 CEBPAP49715 358 aaPredicted RBP16.58■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.58■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 VWDEQ8N2E2 1590 aa16.57■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 PZPP20742 1482 aa16.57■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 HFM1A2PYH4 1435 aa16.56■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 NPATQ14207 1427 aa16.56■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 TET3O43151 1660 aa16.56■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 IQGAP3Q86VI3 1631 aa16.56■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 MYO3AQ8NEV4 1616 aa16.56■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 LMTK2Q8IWU2 1503 aa16.55■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 NAIPQ13075 1403 aa16.55■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 UHRF1BP1Q6BDS2 1440 aa16.54■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 EFCAB6Q5THR3 1501 aa16.54■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 ZNF142P52746 1687 aaPredicted RBP16.53■□□□□ 0.24
CSPG4P1Y-201ENST00000306641 LMTK3Q96Q04 1460 aa16.52■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 ARHGAP31Q2M1Z3 1444 aa16.5■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 SPATA31D1Q6ZQQ2 1576 aa16.5■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 ERVK-7P63135 1459 aa16.49■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 CEP170BQ9Y4F5 1589 aaPredicted RBP16.48■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 E9PCH4 1651 aa16.48■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 NUP155O75694 1391 aa16.48■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 TNRQ92752 1358 aa16.48■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 RPRD2Q5VT52 1461 aaKnown RBP16.47■□□□□ 0.23
CSPG4P1Y-201ENST00000306641 NLRP1Q9C000 1473 aa16.44■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 FBXO31Q5XUX0 539 aaPredicted RBP16.44■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 A2ML1A8K2U0 1454 aa16.43■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 SPHKAPQ2M3C7 1700 aa16.43■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 TRIM52Q96A61 297 aa16.43■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 SYNMO15061 1565 aa16.41■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 ACIN1Q9UKV3 1341 aaKnown RBP16.41■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 POLR1AO95602 1720 aaPredicted RBP16.4■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 UGGT1Q9NYU2 1555 aa16.4■□□□□ 0.22
CSPG4P1Y-201ENST00000306641 UBR1Q8IWV7 1749 aa16.39■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 PIK3C2BO00750 1634 aa16.39■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 HSPA2P54652 639 aa16.39■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 KDM5AP29375 1690 aaKnown RBP16.38■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 NOS1P29475 1434 aa16.37■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 STRCQ7RTU9 1775 aa16.36■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 MYO5BQ9ULV0 1848 aa16.36■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 PLA2R1Q13018 1463 aa16.35■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 ADGRB3O60242 1522 aa16.35■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 SLC4A1APQ9BWU0 796 aaKnown RBP16.34■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 KIF1BO60333 1816 aa16.33■□□□□ 0.21
CSPG4P1Y-201ENST00000306641 STAG3Q9UJ98 1225 aa16.33■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 TRPM2O94759 1503 aa16.32■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 THEMISQ8N1K5 641 aaPredicted RBP16.31■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 SLC52A1Q9NWF4 448 aa16.31■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 PKD2Q13563 968 aa16.3■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 CLTCL1P53675 1640 aa16.29■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 TMEM131LA2VDJ0 1609 aa16.28■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 PTPRTO14522 1441 aa16.28■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 IDI1Q13907 227 aa16.27■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 MPHOSPH9Q99550 1183 aa16.27■□□□□ 0.2
CSPG4P1Y-201ENST00000306641 SLIT1O75093 1534 aa16.26■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 HRCP23327 699 aa16.26■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 DMRT2Q9Y5R5 561 aa16.26■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 IQGAP1P46940 1657 aa16.25■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 CHGAP10645 457 aaKnown RBP16.25■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 NEURL4Q96JN8 1562 aa16.25■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 ANKLE2Q86XL3 938 aa16.24■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 ARHGAP23Q9P227 1491 aa16.23■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 NCKAP5LQ9HCH0 1330 aa16.23■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 SCAF11Q99590 1463 aaKnown RBP16.22■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 EID1Q9Y6B2 187 aa16.22■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 TMEM2Q9UHN6 1383 aa16.22■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 CCDC144AA2RUR9 1427 aa16.21■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 FOXD1Q16676 465 aa16.21■□□□□ 0.19
CSPG4P1Y-201ENST00000306641 NPHP4O75161 1426 aaPredicted RBP16.19■□□□□ 0.18
CSPG4P1Y-201ENST00000306641 MED14O60244 1454 aa16.19■□□□□ 0.18
CSPG4P1Y-201ENST00000306641 RIMS2Q9UQ26 1411 aa16.18■□□□□ 0.18
CSPG4P1Y-201ENST00000306641 HDGFP51858 240 aaKnown RBP16.17■□□□□ 0.18
CSPG4P1Y-201ENST00000306641 ZNF326Q5BKZ1 582 aaKnown RBP16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms