RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 KIF3BO15066 747 aa14.23□□□□□ -0.13
RFX3-201ENST00000302303 MROH1Q8NDA8 1641 aa14.23□□□□□ -0.13
RFX3-201ENST00000302303 EIF2AK4Q9P2K8 1649 aaKnown RBP14.22□□□□□ -0.13
RFX3-201ENST00000302303 DEPDC5O75140 1603 aa14.2□□□□□ -0.14
RFX3-201ENST00000302303 RNF17Q9BXT8 1623 aaKnown RBP14.2□□□□□ -0.14
RFX3-201ENST00000302303 UNC13BO14795 1591 aa14.19□□□□□ -0.14
RFX3-201ENST00000302303 VWDEQ8N2E2 1590 aa14.19□□□□□ -0.14
RFX3-201ENST00000302303 PRDM15P57071 1507 aaPredicted RBP14.17□□□□□ -0.14
RFX3-201ENST00000302303 PZPP20742 1482 aa14.16□□□□□ -0.14
RFX3-201ENST00000302303 GGT6Q6P531 493 aa14.16□□□□□ -0.14
RFX3-201ENST00000302303 KDM5DQ9BY66 1539 aa14.16□□□□□ -0.14
RFX3-201ENST00000302303 NUP155O75694 1391 aa14.15□□□□□ -0.14
RFX3-201ENST00000302303 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.15□□□□□ -0.147e-6■□□□□ 10.8
RFX3-201ENST00000302303 MLECQ14165 292 aa14.14□□□□□ -0.15
RFX3-201ENST00000302303 ARID4BQ4LE39 1312 aaPredicted RBP14.13□□□□□ -0.15
RFX3-201ENST00000302303 IQGAP3Q86VI3 1631 aa14.12□□□□□ -0.15
RFX3-201ENST00000302303 TRIM52Q96A61 297 aa14.12□□□□□ -0.15
RFX3-201ENST00000302303 PPP6R1Q9UPN7 881 aa14.12□□□□□ -0.15
RFX3-201ENST00000302303 LMTK2Q8IWU2 1503 aa14.12□□□□□ -0.15
RFX3-201ENST00000302303 FAM135AQ9P2D6 1515 aa14.12□□□□□ -0.15
RFX3-201ENST00000302303 ABCC3O15438 1527 aa14.11□□□□□ -0.15
RFX3-201ENST00000302303 MPHOSPH9Q99550 1183 aa14.11□□□□□ -0.15
RFX3-201ENST00000302303 DHX57Q6P158 1386 aaKnown RBP14.11□□□□□ -0.15
RFX3-201ENST00000302303 ADAMTSL3P82987 1691 aa14.1□□□□□ -0.15
RFX3-201ENST00000302303 ACIN1Q9UKV3 1341 aaKnown RBP14.1□□□□□ -0.15
RFX3-201ENST00000302303 WASHC2CQ9Y4E1 1318 aa14.09□□□□□ -0.15
RFX3-201ENST00000302303 CEP152O94986 1710 aa14.08□□□□□ -0.16
RFX3-201ENST00000302303 SLC4A1APQ9BWU0 796 aaKnown RBP14.07□□□□□ -0.16
RFX3-201ENST00000302303 KANK1Q14678 1352 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 KDM4FA0A1W2PPD8 638 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 PKD2Q13563 968 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 FOXD1Q16676 465 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 NPATQ14207 1427 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 ARHGAP31Q2M1Z3 1444 aa14.06□□□□□ -0.16
RFX3-201ENST00000302303 TET3O43151 1660 aa14.05□□□□□ -0.16
RFX3-201ENST00000302303 CLTCQ00610 1675 aaKnown RBP14.05□□□□□ -0.16
RFX3-201ENST00000302303 EFCAB6Q5THR3 1501 aa14.05□□□□□ -0.16
RFX3-201ENST00000302303 PLA2R1Q13018 1463 aa14.05□□□□□ -0.16
RFX3-201ENST00000302303 ZMYM3Q14202 1370 aa14.05□□□□□ -0.16
RFX3-201ENST00000302303 E9PCH4 1651 aa14.05□□□□□ -0.16
RFX3-201ENST00000302303 ZC3H13Q5T200 1668 aaKnown RBP14.05□□□□□ -0.16
RFX3-201ENST00000302303 MADDQ8WXG6 1647 aa14.04□□□□□ -0.16
RFX3-201ENST00000302303 CAMSAP1Q5T5Y3 1602 aa14.04□□□□□ -0.16
RFX3-201ENST00000302303 CNTLNQ9NXG0 1405 aa14.03□□□□□ -0.16
RFX3-201ENST00000302303 FBXO31Q5XUX0 539 aaPredicted RBP14.02□□□□□ -0.16
RFX3-201ENST00000302303 PTPRTO14522 1441 aa14.02□□□□□ -0.17
RFX3-201ENST00000302303 FER1L4A9Z1Z3 1794 aa14.02□□□□□ -0.17
RFX3-201ENST00000302303 ANKRD30BQ9BXX2 1392 aa14.02□□□□□ -0.17
RFX3-201ENST00000302303 CEBPAP49715 358 aaPredicted RBP14.01□□□□□ -0.17
RFX3-201ENST00000302303 MROH2AA6NES4 1674 aa14.01□□□□□ -0.17
RFX3-201ENST00000302303 RPRD2Q5VT52 1461 aaKnown RBP14.01□□□□□ -0.17
RFX3-201ENST00000302303 NOS1P29475 1434 aa14□□□□□ -0.17
RFX3-201ENST00000302303 C3P01024 1663 aa13.99□□□□□ -0.17
RFX3-201ENST00000302303 RIMS1Q86UR5 1692 aaKnown RBP13.98□□□□□ -0.17
RFX3-201ENST00000302303 PTPRMP28827 1452 aa13.97□□□□□ -0.17
RFX3-201ENST00000302303 ERVK-7P63135 1459 aa13.97□□□□□ -0.17
RFX3-201ENST00000302303 SPATA31D1Q6ZQQ2 1576 aa13.97□□□□□ -0.17
RFX3-201ENST00000302303 SYNMO15061 1565 aa13.96□□□□□ -0.17
RFX3-201ENST00000302303 ESF1Q9H501 851 aaKnown RBP13.96□□□□□ -0.17
RFX3-201ENST00000302303 PREX1Q8TCU6 1659 aa13.96□□□□□ -0.18
RFX3-201ENST00000302303 SIN3AQ96ST3 1273 aa13.95□□□□□ -0.18
RFX3-201ENST00000302303 CFAP65Q6ZU64 1925 aaKnown RBP13.94□□□□□ -0.18
RFX3-201ENST00000302303 UGGT1Q9NYU2 1555 aa13.94□□□□□ -0.18
RFX3-201ENST00000302303 TRPM2O94759 1503 aa13.94□□□□□ -0.18
RFX3-201ENST00000302303 SPHKAPQ2M3C7 1700 aa13.94□□□□□ -0.18
RFX3-201ENST00000302303 CCER1Q8TC90 406 aaPredicted RBP13.93□□□□□ -0.18
RFX3-201ENST00000302303 IDI1Q13907 227 aa13.92□□□□□ -0.18
RFX3-201ENST00000302303 PIK3C2BO00750 1634 aa13.92□□□□□ -0.18
RFX3-201ENST00000302303 CLSPNQ9HAW4 1339 aa13.92□□□□□ -0.18
RFX3-201ENST00000302303 CLTCL1P53675 1640 aa13.91□□□□□ -0.18
RFX3-201ENST00000302303 TNRQ92752 1358 aa13.9□□□□□ -0.18
RFX3-201ENST00000302303 SLC52A1Q9NWF4 448 aa13.89□□□□□ -0.19
RFX3-201ENST00000302303 SPATA31E1Q6ZUB1 1445 aa13.88□□□□□ -0.19
RFX3-201ENST00000302303 CCDC144AA2RUR9 1427 aa13.87□□□□□ -0.19
RFX3-201ENST00000302303 NEUROD1Q13562 356 aa13.85□□□□□ -0.19
RFX3-201ENST00000302303 TMEM131LA2VDJ0 1609 aa13.84□□□□□ -0.19
RFX3-201ENST00000302303 NLRP1Q9C000 1473 aa13.84□□□□□ -0.19
RFX3-201ENST00000302303 ADGRB3O60242 1522 aa13.83□□□□□ -0.19
RFX3-201ENST00000302303 A2ML1A8K2U0 1454 aa13.83□□□□□ -0.2
RFX3-201ENST00000302303 MYO3AQ8NEV4 1616 aa13.83□□□□□ -0.2
RFX3-201ENST00000302303 SETD1BQ9UPS6 1966 aaKnown RBP13.83□□□□□ -0.2
RFX3-201ENST00000302303 NEURL4Q96JN8 1562 aa13.83□□□□□ -0.2
RFX3-201ENST00000302303 UBR1Q8IWV7 1749 aa13.81□□□□□ -0.2
RFX3-201ENST00000302303 L3MBTL2Q969R5 705 aa13.8□□□□□ -0.2
RFX3-201ENST00000302303 RGL3Q3MIN7 710 aa13.8□□□□□ -0.2
RFX3-201ENST00000302303 CEP170BQ9Y4F5 1589 aaPredicted RBP13.79□□□□□ -0.2
RFX3-201ENST00000302303 KDM5AP29375 1690 aaKnown RBP13.79□□□□□ -0.2
RFX3-201ENST00000302303 MYO5BQ9ULV0 1848 aa13.79□□□□□ -0.2
RFX3-201ENST00000302303 KIF1BO60333 1816 aa13.78□□□□□ -0.2
RFX3-201ENST00000302303 ZNF142P52746 1687 aaPredicted RBP13.78□□□□□ -0.2
RFX3-201ENST00000302303 CHGAP10645 457 aaKnown RBP13.78□□□□□ -0.2
RFX3-201ENST00000302303 ZFYVE9O95405 1425 aa13.77□□□□□ -0.2
RFX3-201ENST00000302303 UHRF1BP1Q6BDS2 1440 aa13.77□□□□□ -0.2
RFX3-201ENST00000302303 LMTK3Q96Q04 1460 aa13.77□□□□□ -0.21
RFX3-201ENST00000302303 ARHGAP23Q9P227 1491 aa13.77□□□□□ -0.21
RFX3-201ENST00000302303 NEXMIFQ5QGS0 1516 aa13.76□□□□□ -0.21
RFX3-201ENST00000302303 TIMELESSQ9UNS1 1208 aa13.76□□□□□ -0.21
RFX3-201ENST00000302303 LTKP29376 864 aa13.75□□□□□ -0.21
RFX3-201ENST00000302303 TMEM2Q9UHN6 1383 aa13.75□□□□□ -0.21
RFX3-201ENST00000302303 SLIT1O75093 1534 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms