RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CDCA8Q53HL2 280 aa14.48□□□□□ -0.09
SHROOM3-201ENST00000296043 LEKR1Q6ZMV7 388 aa14.48□□□□□ -0.09
SHROOM3-201ENST00000296043 PMFBP1Q8TBY8 1022 aa14.48□□□□□ -0.09
SHROOM3-201ENST00000296043 GORABQ5T7V8 394 aa14.47□□□□□ -0.09
SHROOM3-201ENST00000296043 ACBD3Q9H3P7 528 aa14.47□□□□□ -0.09
SHROOM3-201ENST00000296043 DEF6Q9H4E7 631 aa14.47□□□□□ -0.09
SHROOM3-201ENST00000296043 RASSF8Q8NHQ8 419 aa14.47□□□□□ -0.09
SHROOM3-201ENST00000296043 DIAPH3Q9NSV4 1193 aa14.47□□□□□ -0.09
SHROOM3-201ENST00000296043 TSR1Q2NL82 804 aaKnown RBP14.46□□□□□ -0.09
SHROOM3-201ENST00000296043 TPD52L1Q16890 204 aaPredicted RBP14.46□□□□□ -0.09
SHROOM3-201ENST00000296043 GPATCH11Q8N954 259 aa14.45□□□□□ -0.1
SHROOM3-201ENST00000296043 KTN1Q86UP2 1357 aaKnown RBP14.45□□□□□ -0.1
SHROOM3-201ENST00000296043 MRE11P49959 708 aa14.45□□□□□ -0.1
SHROOM3-201ENST00000296043 NPHP1O15259 732 aa14.45□□□□□ -0.1
SHROOM3-201ENST00000296043 TPM1P09493 284 aa14.45□□□□□ -0.1
SHROOM3-201ENST00000296043 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
SHROOM3-201ENST00000296043 IPO8O15397 1037 aaKnown RBP14.44□□□□□ -0.1
SHROOM3-201ENST00000296043 TNNT1P13805 278 aa14.44□□□□□ -0.1
SHROOM3-201ENST00000296043 SF3A1Q15459 793 aaKnown RBP14.44□□□□□ -0.1
SHROOM3-201ENST00000296043 CCDC34Q96HJ3 373 aa14.43□□□□□ -0.1
SHROOM3-201ENST00000296043 MCTP1Q6DN14 999 aa14.43□□□□□ -0.1
SHROOM3-201ENST00000296043 CGNQ9P2M7 1197 aaKnown RBP14.43□□□□□ -0.1
SHROOM3-201ENST00000296043 BBXQ8WY36 941 aaPredicted RBP14.43□□□□□ -0.1
SHROOM3-201ENST00000296043 TRERF1Q96PN7 1200 aa14.43□□□□□ -0.1
SHROOM3-201ENST00000296043 H3BQV1 296 aa14.42□□□□□ -0.1
SHROOM3-201ENST00000296043 HSPA5P11021 654 aaKnown RBP14.42□□□□□ -0.1
SHROOM3-201ENST00000296043 IFFO2Q5TF58 517 aa14.42□□□□□ -0.1
SHROOM3-201ENST00000296043 RNF214Q8ND24 703 aa14.42□□□□□ -0.1
SHROOM3-201ENST00000296043 PLIN1O60240 522 aa14.42□□□□□ -0.1
SHROOM3-201ENST00000296043 CEP89Q96ST8 783 aa14.41□□□□□ -0.1
SHROOM3-201ENST00000296043 PAK3O75914 559 aaPredicted RBP14.41□□□□□ -0.1
SHROOM3-201ENST00000296043 FRAT2O75474 233 aaPredicted RBP14.41□□□□□ -0.1
SHROOM3-201ENST00000296043 EXOC6Q8TAG9 804 aa14.41□□□□□ -0.1
SHROOM3-201ENST00000296043 KIF3AQ9Y496 699 aa14.41□□□□□ -0.1
SHROOM3-201ENST00000296043 IBSPP21815 317 aaPredicted RBP14.4□□□□□ -0.1
SHROOM3-201ENST00000296043 HMMRO75330 724 aa14.4□□□□□ -0.1
SHROOM3-201ENST00000296043 CENPQQ7L2Z9 268 aaPredicted RBP14.4□□□□□ -0.1
SHROOM3-201ENST00000296043 DCTN1Q14203 1278 aa14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 CLUAP1Q96AJ1 413 aa14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 MPNDQ8N594 471 aa14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 DYDC1Q8WWB3 177 aa14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 KIAA0754O94854 1291 aa14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 AXDND1Q5T1B0 1012 aaPredicted RBP14.39□□□□□ -0.11
SHROOM3-201ENST00000296043 HMGN5P82970 282 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-201ENST00000296043 IPO4Q8TEX9 1081 aaKnown RBP14.38□□□□□ -0.11
SHROOM3-201ENST00000296043 GPATCH3Q96I76 525 aa14.38□□□□□ -0.11
SHROOM3-201ENST00000296043 GIMAP7Q8NHV1 300 aa14.38□□□□□ -0.11
SHROOM3-201ENST00000296043 CENPHQ9H3R5 247 aa14.38□□□□□ -0.11
SHROOM3-201ENST00000296043 CHMP5Q9NZZ3 219 aa14.37□□□□□ -0.11
SHROOM3-201ENST00000296043 CAGE1Q8TC20 777 aa14.37□□□□□ -0.11
SHROOM3-201ENST00000296043 CRBNQ96SW2 442 aa14.37□□□□□ -0.11
SHROOM3-201ENST00000296043 CCDC173Q0VFZ6 552 aa14.36□□□□□ -0.11
SHROOM3-201ENST00000296043 TTLL5Q6EMB2 1281 aa14.36□□□□□ -0.11
SHROOM3-201ENST00000296043 ATP6V1DQ9Y5K8 247 aa14.36□□□□□ -0.11
SHROOM3-201ENST00000296043 CDR1P51861 262 aa14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 PCMTD1Q96MG8 357 aaPredicted RBP14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 TSPY4P0CV99 314 aa14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 TSPY10P0CW01 314 aa14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 CCDC146Q8IYE0 955 aa14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 CAVIN1Q6NZI2 390 aaKnown RBP14.35□□□□□ -0.11
SHROOM3-201ENST00000296043 SMC4Q9NTJ3 1288 aa14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 CBX1P83916 185 aa14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 MORC1Q86VD1 984 aa14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 PABPN1Q86U42 306 aaKnown RBP eCLIP14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 CENPJQ9HC77 1338 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 PPP1R15AO75807 674 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 RRP1P56182 461 aaKnown RBP14.34□□□□□ -0.11
SHROOM3-201ENST00000296043 RSPH4AQ5TD94 716 aa14.33□□□□□ -0.11
SHROOM3-201ENST00000296043 NEFHP12036 1026 aa14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 IRX3P78415 501 aaPredicted RBP14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 ZFP91Q96JP5 570 aaPredicted RBP14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 NAP1L1P55209 391 aaKnown RBP14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 TRAK2O60296 914 aa14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 IPO7O95373 1038 aaKnown RBP14.33□□□□□ -0.12
SHROOM3-201ENST00000296043 GOLGA3Q08378 1498 aa14.32□□□□□ -0.12
SHROOM3-201ENST00000296043 SPC24Q8NBT2 197 aa14.32□□□□□ -0.12
SHROOM3-201ENST00000296043 PLCD3Q8N3E9 789 aa14.32□□□□□ -0.12
SHROOM3-201ENST00000296043 BICD2Q8TD16 824 aa14.32□□□□□ -0.12
SHROOM3-201ENST00000296043 FOSBP53539 338 aa14.31□□□□□ -0.12
SHROOM3-201ENST00000296043 PDILTQ8N807 584 aa14.31□□□□□ -0.12
SHROOM3-201ENST00000296043 TICAM2Q86XR7 235 aa14.31□□□□□ -0.12
SHROOM3-201ENST00000296043 SCRIBQ14160 1630 aa14.31□□□□□ -0.12
SHROOM3-201ENST00000296043 PAXIP1Q6ZW49 1069 aaPredicted RBP14.3□□□□□ -0.12
SHROOM3-201ENST00000296043 USP8P40818 1118 aa14.3□□□□□ -0.12
SHROOM3-201ENST00000296043 CT47B1P0C2W7 299 aaPredicted RBP14.3□□□□□ -0.12
SHROOM3-201ENST00000296043 TSPY26PQ9H489 355 aa14.3□□□□□ -0.12
SHROOM3-201ENST00000296043 WWC1Q8IX03 1113 aa14.29□□□□□ -0.12
SHROOM3-201ENST00000296043 FAM193AP78312 1265 aa14.29□□□□□ -0.12
SHROOM3-201ENST00000296043 TMF1P82094 1093 aa14.29□□□□□ -0.12
SHROOM3-201ENST00000296043 ESPNB1AK53 854 aa14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 PDCL2Q8N4E4 241 aa14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 ERCC4Q92889 916 aaPredicted RBP14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 INCENPQ9NQS7 918 aa14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 TRIM5Q9C035 493 aa14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 SASS6Q6UVJ0 657 aa14.28□□□□□ -0.12
SHROOM3-201ENST00000296043 RALBP1Q15311 655 aa14.27□□□□□ -0.12
SHROOM3-201ENST00000296043 FAM184AQ8NB25 1140 aa14.27□□□□□ -0.12
SHROOM3-201ENST00000296043 RILPL2Q969X0 211 aa14.27□□□□□ -0.13
SHROOM3-201ENST00000296043 CCDC112Q8NEF3 446 aa14.26□□□□□ -0.13
SHROOM3-201ENST00000296043 GRPEL1Q9HAV7 217 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms