RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ABCC1P33527 1531 aa13.75□□□□□ -0.21
LIG3-201ENST00000262327 MAST1Q9Y2H9 1570 aa13.75□□□□□ -0.21
LIG3-201ENST00000262327 ANO8Q9HCE9 1232 aaPredicted RBP13.74□□□□□ -0.21
LIG3-201ENST00000262327 PPP4R2Q9NY27 417 aa13.74□□□□□ -0.21
LIG3-201ENST00000262327 GLI2P10070 1586 aa13.73□□□□□ -0.21
LIG3-201ENST00000262327 FANCAO15360 1455 aa13.73□□□□□ -0.21
LIG3-201ENST00000262327 CD109Q6YHK3 1445 aa13.72□□□□□ -0.21
LIG3-201ENST00000262327 ARHGEF12Q9NZN5 1544 aa13.71□□□□□ -0.21
LIG3-201ENST00000262327 CFAP74Q9C0B2 1584 aa13.71□□□□□ -0.21
LIG3-201ENST00000262327 RPRD2Q5VT52 1461 aaKnown RBP13.7□□□□□ -0.22
LIG3-201ENST00000262327 PKD2Q13563 968 aa13.7□□□□□ -0.22
LIG3-201ENST00000262327 ZBED9Q6R2W3 1325 aa13.69□□□□□ -0.22
LIG3-201ENST00000262327 KDM2AQ9Y2K7 1162 aa13.69□□□□□ -0.22
LIG3-201ENST00000262327 TEX14Q8IWB6 1497 aa13.68□□□□□ -0.22
LIG3-201ENST00000262327 PLXNC1O60486 1568 aa13.67□□□□□ -0.22
LIG3-201ENST00000262327 RTEL1-TNFRSF6BF6WH68 1400 aa13.67□□□□□ -0.22
LIG3-201ENST00000262327 MAP3K4Q9Y6R4 1608 aa13.67□□□□□ -0.22
LIG3-201ENST00000262327 ADGRL1O94910 1474 aa13.67□□□□□ -0.22
LIG3-201ENST00000262327 TRAPPC8Q9Y2L5 1435 aa13.66□□□□□ -0.22
LIG3-201ENST00000262327 NEO1Q92859 1461 aa13.66□□□□□ -0.22
LIG3-201ENST00000262327 KIF15Q9NS87 1388 aa13.66□□□□□ -0.22
LIG3-201ENST00000262327 ANKRD50Q9ULJ7 1429 aa13.66□□□□□ -0.22
LIG3-201ENST00000262327 SALL2Q9Y467 1007 aaPredicted RBP13.66□□□□□ -0.22
LIG3-201ENST00000262327 SPATA31E1Q6ZUB1 1445 aa13.66□□□□□ -0.22
LIG3-201ENST00000262327 FANCIQ9NVI1 1328 aa13.65□□□□□ -0.22
LIG3-201ENST00000262327 SCAPERQ9BY12 1400 aa13.65□□□□□ -0.22
LIG3-201ENST00000262327 DIP2BQ9P265 1576 aa13.65□□□□□ -0.22
LIG3-201ENST00000262327 USP47Q96K76 1375 aa13.64□□□□□ -0.23
LIG3-201ENST00000262327 SPAG9O60271 1321 aaKnown RBP13.63□□□□□ -0.23
LIG3-201ENST00000262327 DUOX2Q9NRD8 1548 aa13.62□□□□□ -0.23
LIG3-201ENST00000262327 PZPP20742 1482 aa13.62□□□□□ -0.23
LIG3-201ENST00000262327 DHX29Q7Z478 1369 aaKnown RBP13.61□□□□□ -0.23
LIG3-201ENST00000262327 ZNF518AQ6AHZ1 1483 aa13.61□□□□□ -0.23
LIG3-201ENST00000262327 CARD11Q9BXL7 1154 aa13.61□□□□□ -0.23
LIG3-201ENST00000262327 ZFYVE16Q7Z3T8 1539 aa13.61□□□□□ -0.23
LIG3-201ENST00000262327 FAM69CQ0P6D2 419 aa13.6□□□□□ -0.23
LIG3-201ENST00000262327 TMC1Q8TDI8 760 aa13.6□□□□□ -0.23
LIG3-201ENST00000262327 INO80Q9ULG1 1556 aaPredicted RBP13.6□□□□□ -0.23
LIG3-201ENST00000262327 ERICH6BQ5W0A0 696 aa13.6□□□□□ -0.23
LIG3-201ENST00000262327 AFAP1Q8N556 730 aa13.6□□□□□ -0.23
LIG3-201ENST00000262327 ERBINQ96RT1 1412 aa13.6□□□□□ -0.23
LIG3-201ENST00000262327 KDM5DQ9BY66 1539 aa13.59□□□□□ -0.23
LIG3-201ENST00000262327 POGZQ7Z3K3 1410 aa13.59□□□□□ -0.23
LIG3-201ENST00000262327 CCDC136Q96JN2 1154 aa13.59□□□□□ -0.23
LIG3-201ENST00000262327 ATP7AQ04656 1500 aa13.59□□□□□ -0.23
LIG3-201ENST00000262327 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.23
LIG3-201ENST00000262327 NUP155O75694 1391 aa13.58□□□□□ -0.24
LIG3-201ENST00000262327 NUDCQ9Y266 331 aa13.58□□□□□ -0.24
LIG3-201ENST00000262327 KDM5CP41229 1560 aa13.58□□□□□ -0.24
LIG3-201ENST00000262327 DCAF11Q8TEB1 546 aa13.58□□□□□ -0.24
LIG3-201ENST00000262327 BCORL1Q5H9F3 1711 aa13.56□□□□□ -0.24
LIG3-201ENST00000262327 NBR1Q14596 966 aa13.56□□□□□ -0.24
LIG3-201ENST00000262327 MLH3Q9UHC1 1453 aa13.56□□□□□ -0.24
LIG3-201ENST00000262327 UNC13BO14795 1591 aa13.55□□□□□ -0.24
LIG3-201ENST00000262327 PAK3O75914 559 aaPredicted RBP13.55□□□□□ -0.24
LIG3-201ENST00000262327 RGL3Q3MIN7 710 aa13.55□□□□□ -0.24
LIG3-201ENST00000262327 PNISRQ8TF01 805 aaKnown RBP13.55□□□□□ -0.24
LIG3-201ENST00000262327 PPRC1Q5VV67 1664 aaKnown RBP13.53□□□□□ -0.24
LIG3-201ENST00000262327 KIDINS220Q9ULH0 1771 aa13.53□□□□□ -0.24
LIG3-201ENST00000262327 SMG6Q86US8 1419 aaKnown RBP13.53□□□□□ -0.24
LIG3-201ENST00000262327 KIF13AQ9H1H9 1805 aa13.53□□□□□ -0.24
LIG3-201ENST00000262327 HECW2Q9P2P5 1572 aa13.52□□□□□ -0.24
LIG3-201ENST00000262327 MAGI2Q86UL8 1455 aa13.52□□□□□ -0.24
LIG3-201ENST00000262327 EIF2AK4Q9P2K8 1649 aaKnown RBP13.51□□□□□ -0.25
LIG3-201ENST00000262327 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIG3-201ENST00000262327 RICTORQ6R327 1708 aa13.51□□□□□ -0.25
LIG3-201ENST00000262327 DNAJC5Q9H3Z4 198 aa13.5□□□□□ -0.25
LIG3-201ENST00000262327 MYT1LQ9UL68 1186 aa13.5□□□□□ -0.25
LIG3-201ENST00000262327 IQGAP3Q86VI3 1631 aa13.49□□□□□ -0.25
LIG3-201ENST00000262327 FAM135AQ9P2D6 1515 aa13.49□□□□□ -0.25
LIG3-201ENST00000262327 NOP58Q9Y2X3 529 aaKnown RBP13.49□□□□□ -0.25
LIG3-201ENST00000262327 ZMYM4Q5VZL5 1548 aa13.48□□□□□ -0.25
LIG3-201ENST00000262327 A2MP01023 1474 aa13.48□□□□□ -0.25
LIG3-201ENST00000262327 NBPF1Q3BBV0 1214 aa13.48□□□□□ -0.25
LIG3-201ENST00000262327 NPM2Q86SE8 214 aaKnown RBP13.48□□□□□ -0.25
LIG3-201ENST00000262327 DEPDC5O75140 1603 aa13.48□□□□□ -0.25
LIG3-201ENST00000262327 EXOC6Q8TAG9 804 aa13.48□□□□□ -0.25
LIG3-201ENST00000262327 RAPGEF3O95398 923 aa13.47□□□□□ -0.25
LIG3-201ENST00000262327 TSPOAP1O95153 1857 aa13.47□□□□□ -0.25
LIG3-201ENST00000262327 CC2D1BQ5T0F9 858 aaKnown RBP13.47□□□□□ -0.25
LIG3-201ENST00000262327 FRMPD1Q5SYB0 1578 aa13.47□□□□□ -0.25
LIG3-201ENST00000262327 ROCK2O75116 1388 aaKnown RBP13.46□□□□□ -0.25
LIG3-201ENST00000262327 UBE2Q2Q8WVN8 375 aa13.46□□□□□ -0.25
LIG3-201ENST00000262327 DEKP35659 375 aaKnown RBP13.45□□□□□ -0.26
LIG3-201ENST00000262327 CDCA7LQ96GN5 454 aa13.45□□□□□ -0.26
LIG3-201ENST00000262327 ABCA6Q8N139 1617 aa13.45□□□□□ -0.26
LIG3-201ENST00000262327 SKAP1Q86WV1 359 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 RNF123Q5XPI4 1314 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 PLIN1O60240 522 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 MYBBP1AQ9BQG0 1328 aaKnown RBP13.44□□□□□ -0.26
LIG3-201ENST00000262327 KANK1Q14678 1352 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 VWDEQ8N2E2 1590 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 DIP2CQ9Y2E4 1556 aa13.44□□□□□ -0.26
LIG3-201ENST00000262327 POLR1AO95602 1720 aaPredicted RBP13.44□□□□□ -0.26
LIG3-201ENST00000262327 PRDM15P57071 1507 aaPredicted RBP13.43□□□□□ -0.26
LIG3-201ENST00000262327 RNF17Q9BXT8 1623 aaKnown RBP13.43□□□□□ -0.26
LIG3-201ENST00000262327 KIF3BO15066 747 aa13.42□□□□□ -0.26
LIG3-201ENST00000262327 ANP32AP39687 249 aaKnown RBP13.42□□□□□ -0.26
LIG3-201ENST00000262327 RALGAPBQ86X10 1494 aa13.42□□□□□ -0.26
LIG3-201ENST00000262327 RRP1P56182 461 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms