RNA–Protein interactions for RNA: ENST00000262018.7

SGCA-201, Transcript of sarcoglycan alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCA, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-201ENST00000262018 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.27■■□□□ 1
SGCA-201ENST00000262018 GPATCH8Q9UKJ3 1502 aaKnown RBP21.27■■□□□ 1
SGCA-201ENST00000262018 KIAA1107Q9UPP5 1409 aa21.25■□□□□ 0.99
SGCA-201ENST00000262018 LOC105371045A0A1W2PR82 267 aa21.25■□□□□ 0.99
SGCA-201ENST00000262018 NPHP4O75161 1426 aaPredicted RBP21.25■□□□□ 0.99
SGCA-201ENST00000262018 CASKIN1Q8WXD9 1431 aa21.25■□□□□ 0.99
SGCA-201ENST00000262018 THEMISQ8N1K5 641 aaPredicted RBP21.24■□□□□ 0.99
SGCA-201ENST00000262018 CFDP1Q9UEE9 299 aaPredicted RBP21.24■□□□□ 0.99
SGCA-201ENST00000262018 PLEKHH2Q8IVE3 1493 aa21.24■□□□□ 0.99
SGCA-201ENST00000262018 ADGBQ8N7X0 1667 aa21.21■□□□□ 0.99
SGCA-201ENST00000262018 LRRC7Q96NW7 1537 aa21.19■□□□□ 0.98
SGCA-201ENST00000262018 MED14O60244 1454 aa21.19■□□□□ 0.98
SGCA-201ENST00000262018 PZPP20742 1482 aa21.18■□□□□ 0.98
SGCA-201ENST00000262018 RNF17Q9BXT8 1623 aaKnown RBP21.17■□□□□ 0.98
SGCA-201ENST00000262018 CCNB3Q8WWL7 1395 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 FAM135AQ9P2D6 1515 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 KIF3BO15066 747 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 POTEAQ6S8J7 498 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 DEPDC5O75140 1603 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 UGGT1Q9NYU2 1555 aa21.16■□□□□ 0.98
SGCA-201ENST00000262018 MIA2Q96PC5 1412 aa21.15■□□□□ 0.98
SGCA-201ENST00000262018 STRCP1A6NGW2 1772 aa21.14■□□□□ 0.98
SGCA-201ENST00000262018 DHX29Q7Z478 1369 aaKnown RBP21.14■□□□□ 0.97
SGCA-201ENST00000262018 NLRP1Q9C000 1473 aa21.14■□□□□ 0.97
SGCA-201ENST00000262018 IQGAP1P46940 1657 aa21.13■□□□□ 0.97
SGCA-201ENST00000262018 WASHC2CQ9Y4E1 1318 aa21.13■□□□□ 0.97
SGCA-201ENST00000262018 ZNF644Q9H582 1327 aaPredicted RBP21.12■□□□□ 0.97
SGCA-201ENST00000262018 KDM5DQ9BY66 1539 aa21.12■□□□□ 0.97
SGCA-201ENST00000262018 FYCO1Q9BQS8 1478 aa21.11■□□□□ 0.97
SGCA-201ENST00000262018 SYNMO15061 1565 aa21.11■□□□□ 0.97
SGCA-201ENST00000262018 RTEL1-TNFRSF6BF6WH68 1400 aa21.09■□□□□ 0.97
SGCA-201ENST00000262018 MBD5Q9P267 1494 aa21.06■□□□□ 0.96
SGCA-201ENST00000262018 MTUS2Q5JR59 1369 aa21.02■□□□□ 0.96
SGCA-201ENST00000262018 FAM135BQ49AJ0 1406 aa21■□□□□ 0.95
SGCA-201ENST00000262018 SETD1AO15047 1707 aaKnown RBP20.99■□□□□ 0.95
SGCA-201ENST00000262018 ZC3H13Q5T200 1668 aaKnown RBP20.98■□□□□ 0.95
SGCA-201ENST00000262018 TIAM1Q13009 1591 aa20.97■□□□□ 0.95
SGCA-201ENST00000262018 SCAF11Q99590 1463 aaKnown RBP20.95■□□□□ 0.94
SGCA-201ENST00000262018 XIRP1Q702N8 1843 aaKnown RBP20.95■□□□□ 0.94
SGCA-201ENST00000262018 LTKP29376 864 aa20.94■□□□□ 0.94
SGCA-201ENST00000262018 TXNDC2Q86VQ3 553 aa20.94■□□□□ 0.94
SGCA-201ENST00000262018 CCDC141Q6ZP82 1450 aa20.94■□□□□ 0.94
SGCA-201ENST00000262018 ERVK-7P63135 1459 aa20.92■□□□□ 0.94
SGCA-201ENST00000262018 ABCC3O15438 1527 aa20.89■□□□□ 0.94
SGCA-201ENST00000262018 TMEM94Q12767 1356 aa20.89■□□□□ 0.93
SGCA-201ENST00000262018 UBR1Q8IWV7 1749 aa20.88■□□□□ 0.93
SGCA-201ENST00000262018 RSPH4AQ5TD94 716 aa20.88■□□□□ 0.93
SGCA-201ENST00000262018 UPF1Q92900 1129 aaKnown RBP eCLIP20.88■□□□□ 0.93
SGCA-201ENST00000262018 ROBO1Q9Y6N7 1651 aa20.88■□□□□ 0.93
SGCA-201ENST00000262018 NCOA2Q15596 1464 aa20.87■□□□□ 0.93
SGCA-201ENST00000262018 EID1Q9Y6B2 187 aa20.87■□□□□ 0.93
SGCA-201ENST00000262018 CAMSAP2Q08AD1 1489 aa20.85■□□□□ 0.93
SGCA-201ENST00000262018 ARHGAP23Q9P227 1491 aa20.85■□□□□ 0.93
SGCA-201ENST00000262018 EHBP1L1Q8N3D4 1523 aa20.85■□□□□ 0.93
SGCA-201ENST00000262018 TSPY4P0CV99 314 aa20.85■□□□□ 0.93
SGCA-201ENST00000262018 TSPY10P0CW01 314 aa20.85■□□□□ 0.93
SGCA-201ENST00000262018 RBM33Q96EV2 1170 aaKnown RBP20.85■□□□□ 0.93
SGCA-201ENST00000262018 SLIT1O75093 1534 aa20.84■□□□□ 0.93
SGCA-201ENST00000262018 CEP162Q5TB80 1403 aa20.84■□□□□ 0.93
SGCA-201ENST00000262018 PROSER2Q86WR7 435 aaPredicted RBP20.84■□□□□ 0.93
SGCA-201ENST00000262018 CFAP65Q6ZU64 1925 aaKnown RBP20.82■□□□□ 0.92
SGCA-201ENST00000262018 TRIM52Q96A61 297 aa20.82■□□□□ 0.92
SGCA-201ENST00000262018 JCADQ9P266 1359 aa20.82■□□□□ 0.92
SGCA-201ENST00000262018 LRRC9Q6ZRR7 1453 aa20.8■□□□□ 0.92
SGCA-201ENST00000262018 KCNA6P17658 529 aa20.8■□□□□ 0.92
SGCA-201ENST00000262018 MAP3K1Q13233 1512 aa20.79■□□□□ 0.92
SGCA-201ENST00000262018 PHLPP1O60346 1717 aa20.77■□□□□ 0.92
SGCA-201ENST00000262018 MEX3CQ5U5Q3 659 aaKnown RBP20.77■□□□□ 0.91
SGCA-201ENST00000262018 CEP152O94986 1710 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 ARHGEF5Q12774 1597 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 TMEM2Q9UHN6 1383 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 ZNF772Q68DY9 489 aaPredicted RBP20.76■□□□□ 0.91
SGCA-201ENST00000262018 SLC26A8Q96RN1 970 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 SLAIN2Q9P270 581 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 STAG3Q9UJ98 1225 aa20.76■□□□□ 0.91
SGCA-201ENST00000262018 MROH1Q8NDA8 1641 aa20.74■□□□□ 0.91
SGCA-201ENST00000262018 MSH6P52701 1360 aa20.74■□□□□ 0.91
SGCA-201ENST00000262018 PRDM15P57071 1507 aaPredicted RBP20.72■□□□□ 0.91
SGCA-201ENST00000262018 EIF2AK4Q9P2K8 1649 aaKnown RBP20.72■□□□□ 0.91
SGCA-201ENST00000262018 LRP6O75581 1613 aa20.71■□□□□ 0.91
SGCA-201ENST00000262018 PIK3C2BO00750 1634 aa20.7■□□□□ 0.9
SGCA-201ENST00000262018 SPATA31A6Q5VVP1 1343 aa20.7■□□□□ 0.9
SGCA-201ENST00000262018 RXRBP28702 533 aa20.7■□□□□ 0.9
SGCA-201ENST00000262018 NKTRP30414 1462 aaKnown RBP20.68■□□□□ 0.9
SGCA-201ENST00000262018 ARHGAP31Q2M1Z3 1444 aa20.68■□□□□ 0.9
SGCA-201ENST00000262018 BCANQ96GW7 911 aa20.67■□□□□ 0.9
SGCA-201ENST00000262018 COL16A1Q07092 1604 aaPredicted RBP20.67■□□□□ 0.9
SGCA-201ENST00000262018 MAST1Q9Y2H9 1570 aa20.66■□□□□ 0.9
SGCA-201ENST00000262018 TET3O43151 1660 aa20.66■□□□□ 0.9
SGCA-201ENST00000262018 EFCAB6Q5THR3 1501 aa20.65■□□□□ 0.9
SGCA-201ENST00000262018 FGD6Q6ZV73 1430 aa20.65■□□□□ 0.9
SGCA-201ENST00000262018 NWD1Q149M9 1564 aa20.64■□□□□ 0.89
SGCA-201ENST00000262018 IDI1Q13907 227 aa20.63■□□□□ 0.89
SGCA-201ENST00000262018 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.63■□□□□ 0.89
SGCA-201ENST00000262018 DUOX2Q9NRD8 1548 aa20.61■□□□□ 0.89
SGCA-201ENST00000262018 NUTM2BA6NNL0 878 aaPredicted RBP20.6■□□□□ 0.89
SGCA-201ENST00000262018 NUTM2EB1AL46 878 aaPredicted RBP20.6■□□□□ 0.89
SGCA-201ENST00000262018 NUTM2AQ8IVF1 878 aaPredicted RBP20.6■□□□□ 0.89
SGCA-201ENST00000262018 CDK12Q9NYV4 1490 aaPredicted RBP20.6■□□□□ 0.89
SGCA-201ENST00000262018 C14orf37Q86TY3 774 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms