RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 ERBINQ96RT1 1412 aa25.46■■□□□ 1.67
SDCBP-201ENST00000260130 CEBPAP49715 358 aaPredicted RBP25.46■■□□□ 1.67
SDCBP-201ENST00000260130 ROCK1Q13464 1354 aa25.44■■□□□ 1.66
SDCBP-201ENST00000260130 EIF2AK4Q9P2K8 1649 aaKnown RBP25.44■■□□□ 1.66
SDCBP-201ENST00000260130 ZMYM3Q14202 1370 aa25.41■■□□□ 1.66
SDCBP-201ENST00000260130 WASHC2CQ9Y4E1 1318 aa25.41■■□□□ 1.66
SDCBP-201ENST00000260130 RNF17Q9BXT8 1623 aaKnown RBP25.39■■□□□ 1.65
SDCBP-201ENST00000260130 ANKRD50Q9ULJ7 1429 aa25.39■■□□□ 1.65
SDCBP-201ENST00000260130 CLTCQ00610 1675 aaKnown RBP25.37■■□□□ 1.65
SDCBP-201ENST00000260130 FAM135AQ9P2D6 1515 aa25.36■■□□□ 1.65
SDCBP-201ENST00000260130 MROH2AA6NES4 1674 aa25.36■■□□□ 1.65
SDCBP-201ENST00000260130 KDM5DQ9BY66 1539 aa25.35■■□□□ 1.65
SDCBP-201ENST00000260130 C3P01024 1663 aa25.35■■□□□ 1.65
SDCBP-201ENST00000260130 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.34■■□□□ 1.65
SDCBP-201ENST00000260130 MROH1Q8NDA8 1641 aa25.33■■□□□ 1.65
SDCBP-201ENST00000260130 PRDM15P57071 1507 aaPredicted RBP25.29■■□□□ 1.64
SDCBP-201ENST00000260130 KANK1Q14678 1352 aa25.29■■□□□ 1.64
SDCBP-201ENST00000260130 ABCC3O15438 1527 aa25.29■■□□□ 1.64
SDCBP-201ENST00000260130 DEPDC5O75140 1603 aa25.29■■□□□ 1.64
SDCBP-201ENST00000260130 NPATQ14207 1427 aa25.28■■□□□ 1.64
SDCBP-201ENST00000260130 ZC3H13Q5T200 1668 aaKnown RBP25.26■■□□□ 1.63
SDCBP-201ENST00000260130 PZPP20742 1482 aa25.24■■□□□ 1.63
SDCBP-201ENST00000260130 FBXO31Q5XUX0 539 aaPredicted RBP25.23■■□□□ 1.63
SDCBP-201ENST00000260130 LMTK3Q96Q04 1460 aa25.23■■□□□ 1.63
SDCBP-201ENST00000260130 NAIPQ13075 1403 aa25.23■■□□□ 1.63
SDCBP-201ENST00000260130 SETD1BQ9UPS6 1966 aaKnown RBP25.22■■□□□ 1.63
SDCBP-201ENST00000260130 VWDEQ8N2E2 1590 aa25.21■■□□□ 1.63
SDCBP-201ENST00000260130 HFM1A2PYH4 1435 aa25.21■■□□□ 1.63
SDCBP-201ENST00000260130 UHRF1BP1Q6BDS2 1440 aa25.21■■□□□ 1.63
SDCBP-201ENST00000260130 HRCP23327 699 aa25.2■■□□□ 1.62
SDCBP-201ENST00000260130 CEP152O94986 1710 aa25.2■■□□□ 1.62
SDCBP-201ENST00000260130 PREX1Q8TCU6 1659 aa25.18■■□□□ 1.62
SDCBP-201ENST00000260130 LMTK2Q8IWU2 1503 aa25.18■■□□□ 1.62
SDCBP-201ENST00000260130 CAMSAP1Q5T5Y3 1602 aa25.17■■□□□ 1.62
SDCBP-201ENST00000260130 ARHGAP31Q2M1Z3 1444 aa25.17■■□□□ 1.62
SDCBP-201ENST00000260130 UNC13BO14795 1591 aa25.17■■□□□ 1.62
SDCBP-201ENST00000260130 HSPA2P54652 639 aa25.15■■□□□ 1.62
SDCBP-201ENST00000260130 NUP155O75694 1391 aa25.15■■□□□ 1.62
SDCBP-201ENST00000260130 TNRQ92752 1358 aa25.15■■□□□ 1.62
SDCBP-201ENST00000260130 GCC2Q8IWJ2 1684 aa25.14■■□□□ 1.62
SDCBP-201ENST00000260130 ERVK-7P63135 1459 aa25.11■■□□□ 1.61
SDCBP-201ENST00000260130 SPATA31D1Q6ZQQ2 1576 aa25.1■■□□□ 1.61
SDCBP-201ENST00000260130 EFCAB6Q5THR3 1501 aa25.08■■□□□ 1.61
SDCBP-201ENST00000260130 MYO3AQ8NEV4 1616 aa25.08■■□□□ 1.6
SDCBP-201ENST00000260130 IQGAP3Q86VI3 1631 aa25.07■■□□□ 1.6
SDCBP-201ENST00000260130 TET3O43151 1660 aa25.05■■□□□ 1.6
SDCBP-201ENST00000260130 TRIM52Q96A61 297 aa25.05■■□□□ 1.6
SDCBP-201ENST00000260130 A2ML1A8K2U0 1454 aa25.04■■□□□ 1.6
SDCBP-201ENST00000260130 RPRD2Q5VT52 1461 aaKnown RBP25.04■■□□□ 1.6
SDCBP-201ENST00000260130 NLRP1Q9C000 1473 aa25.04■■□□□ 1.6
SDCBP-201ENST00000260130 CEP170BQ9Y4F5 1589 aaPredicted RBP25.04■■□□□ 1.6
SDCBP-201ENST00000260130 PCGF6Q9BYE7 350 aa25.03■■□□□ 1.6
SDCBP-201ENST00000260130 SETD5Q9C0A6 1442 aa25.02■■□□□ 1.6
SDCBP-201ENST00000260130 CFAP65Q6ZU64 1925 aaKnown RBP25.02■■□□□ 1.6
SDCBP-201ENST00000260130 ZNF142P52746 1687 aaPredicted RBP25.01■■□□□ 1.59
SDCBP-201ENST00000260130 NOS1P29475 1434 aa25■■□□□ 1.59
SDCBP-201ENST00000260130 THEMISQ8N1K5 641 aaPredicted RBP24.97■■□□□ 1.59
SDCBP-201ENST00000260130 ACIN1Q9UKV3 1341 aaKnown RBP24.96■■□□□ 1.59
SDCBP-201ENST00000260130 E9PCH4 1651 aa24.96■■□□□ 1.59
SDCBP-201ENST00000260130 IDI1Q13907 227 aa24.95■■□□□ 1.59
SDCBP-201ENST00000260130 UGGT1Q9NYU2 1555 aa24.95■■□□□ 1.58
SDCBP-201ENST00000260130 SLC52A1Q9NWF4 448 aa24.95■■□□□ 1.58
SDCBP-201ENST00000260130 SLC4A1APQ9BWU0 796 aaKnown RBP24.94■■□□□ 1.58
SDCBP-201ENST00000260130 SYNMO15061 1565 aa24.94■■□□□ 1.58
SDCBP-201ENST00000260130 RAB3GAP2Q9H2M9 1393 aa24.93■■□□□ 1.58
SDCBP-201ENST00000260130 PLA2R1Q13018 1463 aa24.92■■□□□ 1.58
SDCBP-201ENST00000260130 PKD2Q13563 968 aa24.91■■□□□ 1.58
SDCBP-201ENST00000260130 DMRT2Q9Y5R5 561 aa24.9■■□□□ 1.58
SDCBP-201ENST00000260130 STAG3Q9UJ98 1225 aa24.89■■□□□ 1.58
SDCBP-201ENST00000260130 NCKAP5LQ9HCH0 1330 aa24.88■■□□□ 1.57
SDCBP-201ENST00000260130 STRCQ7RTU9 1775 aa24.88■■□□□ 1.57
SDCBP-201ENST00000260130 MPHOSPH9Q99550 1183 aa24.87■■□□□ 1.57
SDCBP-201ENST00000260130 PIK3C2BO00750 1634 aa24.86■■□□□ 1.57
SDCBP-201ENST00000260130 PTPRTO14522 1441 aa24.86■■□□□ 1.57
SDCBP-201ENST00000260130 ANKLE2Q86XL3 938 aa24.86■■□□□ 1.57
SDCBP-201ENST00000260130 UBR1Q8IWV7 1749 aa24.85■■□□□ 1.57
SDCBP-201ENST00000260130 TRIM26Q12899 539 aaPredicted RBP24.83■■□□□ 1.56
SDCBP-201ENST00000260130 FOXD1Q16676 465 aa24.8■■□□□ 1.56
SDCBP-201ENST00000260130 SPHKAPQ2M3C7 1700 aa24.79■■□□□ 1.56
SDCBP-201ENST00000260130 KDM5AP29375 1690 aaKnown RBP24.79■■□□□ 1.56
SDCBP-201ENST00000260130 CHGAP10645 457 aaKnown RBP24.79■■□□□ 1.56
SDCBP-201ENST00000260130 ADGRB3O60242 1522 aa24.79■■□□□ 1.56
SDCBP-201ENST00000260130 TMEM2Q9UHN6 1383 aa24.78■■□□□ 1.56
SDCBP-201ENST00000260130 SLIT1O75093 1534 aa24.77■■□□□ 1.56
SDCBP-201ENST00000260130 ARHGAP23Q9P227 1491 aa24.77■■□□□ 1.56
SDCBP-201ENST00000260130 TXNDC2Q86VQ3 553 aa24.77■■□□□ 1.56
SDCBP-201ENST00000260130 EID1Q9Y6B2 187 aa24.76■■□□□ 1.55
SDCBP-201ENST00000260130 TRPM2O94759 1503 aa24.76■■□□□ 1.55
SDCBP-201ENST00000260130 LTKP29376 864 aa24.76■■□□□ 1.55
SDCBP-201ENST00000260130 TMEM131LA2VDJ0 1609 aa24.74■■□□□ 1.55
SDCBP-201ENST00000260130 NEURL4Q96JN8 1562 aa24.72■■□□□ 1.55
SDCBP-201ENST00000260130 MED14O60244 1454 aa24.72■■□□□ 1.55
SDCBP-201ENST00000260130 SCAF11Q99590 1463 aaKnown RBP24.72■■□□□ 1.55
SDCBP-201ENST00000260130 POLR1AO95602 1720 aaPredicted RBP24.72■■□□□ 1.55
SDCBP-201ENST00000260130 NPHP4O75161 1426 aaPredicted RBP24.71■■□□□ 1.55
SDCBP-201ENST00000260130 HDGFP51858 240 aaKnown RBP24.7■■□□□ 1.54
SDCBP-201ENST00000260130 CLTCL1P53675 1640 aa24.69■■□□□ 1.54
SDCBP-201ENST00000260130 RIMS2Q9UQ26 1411 aa24.67■■□□□ 1.54
SDCBP-201ENST00000260130 ZFYVE9O95405 1425 aa24.66■■□□□ 1.54
SDCBP-201ENST00000260130 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms