RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NCALDP61601 193 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 BASP1P80723 227 aaKnown RBP6.55□□□□□ -1.36
SCN1A-217ENST00000637988 HPCAP84074 193 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CDK17Q00537 523 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 DEUP1Q05D60 604 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 EFHC2Q5JST6 749 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 SPON2Q9BUD6 331 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 NFKBIZQ9BYH8 718 aa6.55□□□□□ -1.36
SCN1A-217ENST00000637988 CALB1P05937 261 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 IGFBP4P22692 258 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 AKT1P31749 480 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 HSD17B4P51659 736 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 KPNA1P52294 538 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 PDCLQ13371 301 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 KCNB1Q14721 858 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SLC9A5Q14940 896 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 PCSK9Q8NBP7 692 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ASAP3Q8TDY4 903 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RMDN1Q96DB5 314 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SERPINI1Q99574 410 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RPAP3Q9H6T3 665 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SLC39A2Q9NP94 309 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 UBE2TQ9NPD8 197 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 FGFR1OP2Q9NVK5 253 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 AFF4Q9UHB7 1163 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ZCCHC11Q5TAX3 1644 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 CTNNA1P35221 906 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SLC16A2P36021 539 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 DYNLT1P63172 113 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 MESDQ14696 234 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 MAPKBP1O60336 1514 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 GSNP06396 782 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 STAT3P40763 770 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SGO2Q562F6 1265 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 USP13Q92995 863 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 EXT2Q93063 718 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 DTNBP1Q96EV8 351 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGAP26Q9UNA1 814 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ADCY9O60503 1353 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RPS6KA5O75582 802 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 GH1P01241 217 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 HIRAP54198 1017 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 EIF4A1P60842 406 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 CAPN12Q6ZSI9 719 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 PRAMEP78395 509 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 NBPF20Q3BBV1 942 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGAP18Q8N392 663 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SCFD1Q8WVM8 642 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 HES6Q96HZ4 224 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 VPS50Q96JG6 964 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 COLEC11Q9BWP8 271 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 EFCAB8A8MWE9 144 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RRP9O43818 475 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SLC25A27O95847 323 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 CYP2E1P05181 493 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RAG1P15918 1043 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 ZFXP17010 805 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RPS12P25398 132 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 FANCCQ00597 558 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 TKFCQ3LXA3 575 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 MICALL2Q8IY33 904 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 KIF12Q96FN5 646 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 FAM227BQ96M60 508 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 SEPT5Q99719 369 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 UPF3AQ9H1J1 476 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RAVER2Q9HCJ3 691 aaKnown RBP6.54□□□□□ -1.36
SCN1A-217ENST00000637988 RNF146Q9NTX7 359 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 PCDHA5Q9Y5H7 936 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 USP19O94966 1318 aa6.54□□□□□ -1.36
SCN1A-217ENST00000637988 GTPBP10A4D1E9 387 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 LRRC53A6NM62 1247 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PRR29P0C7W0 189 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 MXI1P50539 228 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 IL9RQ01113 521 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NME3Q13232 169 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SNX1Q13596 522 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ANO4Q32M45 955 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ZBTB41Q5SVQ8 909 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PLEKHM2Q8IWE5 1019 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ANKRD42Q8N9B4 389 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CXorf38Q8TB03 319 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PCIF1Q9H4Z3 704 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ITSN1Q15811 1721 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 DFFAO00273 331 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 H2AFZP0C0S5 128 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HOXA13P31271 388 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 ARHGAP25P42331 645 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CDK8P49336 464 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 SPP2Q13103 211 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 MUM1Q2TAK8 710 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 HABP4Q5JVS0 413 aaKnown RBP6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CES5AQ6NT32 575 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 H2AFVQ71UI9 128 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 BTN2A2Q8WVV5 523 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 PSMB7Q99436 277 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 TRIM35Q9UPQ4 493 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 L3MBTL1Q9Y468 752 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 CFAP99D6REC4 459 aa6.53□□□□□ -1.36
SCN1A-217ENST00000637988 NDUFS2O75306 463 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms