RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CRYBB1P53674 252 aaPredicted RBP21.49■■□□□ 1.03
UPF1-209ENST00000600310 EPHB4P54760 987 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 NLRP11P59045 1033 aaKnown RBP21.49■■□□□ 1.03
UPF1-209ENST00000600310 NAALADL2Q58DX5 795 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 RINT1Q6NUQ1 792 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 C1orf186Q6ZWK4 172 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 CDHR5Q9HBB8 845 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 FAM13BQ9NYF5 915 aa21.49■■□□□ 1.03
UPF1-209ENST00000600310 COLQQ9Y215 455 aaPredicted RBP21.49■■□□□ 1.03
UPF1-209ENST00000600310 DNAH12Q6ZR08 3092 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 ASAP2O43150 1006 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 SSBP05455 408 aaKnown RBP eCLIP21.48■■□□□ 1.03
UPF1-209ENST00000600310 CMA1P23946 247 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 BMP8BP34820 402 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 KIZQ2M2Z5 673 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 FBXO47Q5MNV8 452 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 C16orf59Q7L2K0 433 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 MAEAQ7L5Y9 396 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 DEFB128Q7Z7B8 93 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 RHPN2Q8IUC4 686 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 USP38Q8NB14 1042 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 PRPF31Q8WWY3 499 aaKnown RBP21.48■■□□□ 1.03
UPF1-209ENST00000600310 LARP4BQ92615 738 aaKnown RBP21.48■■□□□ 1.03
UPF1-209ENST00000600310 PPP1R16BQ96T49 567 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 RUSC1Q9BVN2 902 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 PANK2Q9BZ23 570 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 OSBPL7Q9BZF2 842 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 KCND2Q9NZV8 630 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 GINS2Q9Y248 185 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 COL4A3BPQ9Y5P4 624 aa21.48■■□□□ 1.03
UPF1-209ENST00000600310 EVPLQ92817 2033 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 A0A1W2PQ27 194 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 A0A1W2PQ64 194 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 A0A1W2PQD8 194 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 ACRP10323 421 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 STAT6P42226 847 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 LAMTOR4Q0VGL1 99 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 MCM6Q14566 821 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 MXD4Q14582 209 aaPredicted RBP21.47■■□□□ 1.03
UPF1-209ENST00000600310 LPIN1Q14693 890 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 ZNF410Q86VK4 478 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 PDILTQ8N807 584 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 UBE2OQ9C0C9 1292 aaKnown RBP21.47■■□□□ 1.03
UPF1-209ENST00000600310 POLR3FQ9H1D9 316 aaPredicted RBP21.47■■□□□ 1.03
UPF1-209ENST00000600310 PRO3102Q9H379 93 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 GPRC5CQ9NQ84 441 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 ARID2Q68CP9 1835 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 CEP290O15078 2479 aa21.47■■□□□ 1.03
UPF1-209ENST00000600310 TANC1Q9C0D5 1861 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 GHRP10912 638 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 GUCY2CP25092 1073 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 FXR1P51114 621 aaKnown RBP eCLIP21.46■■□□□ 1.03
UPF1-209ENST00000600310 E2F4Q16254 413 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 PLEKHG4Q58EX7 1191 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 TMEM240Q5SV17 173 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 FAM102BQ5T8I3 360 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 PSRC1Q6PGN9 363 aaPredicted RBP21.46■■□□□ 1.03
UPF1-209ENST00000600310 TSHZ1Q6ZSZ6 1077 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 KSR1Q8IVT5 923 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 ASAP3Q8TDY4 903 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 TMEM40Q8WWA1 233 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 NLRP7Q8WX94 980 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 ZNF668Q96K58 619 aaPredicted RBP21.46■■□□□ 1.03
UPF1-209ENST00000600310 OSMRQ99650 979 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 TIPINQ9BVW5 301 aa21.46■■□□□ 1.03
UPF1-209ENST00000600310 TCHHQ07283 1943 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 A0A087WZ62 844 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 GLRA2P23416 452 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 CSPP1Q1MSJ5 1256 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 ZNF365Q70YC5 407 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 IQUBQ8NA54 791 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 DBF4BQ8NFT6 615 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 KIFAP3Q92845 792 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 NLRP4Q96MN2 994 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 SCLT1Q96NL6 688 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 FDXACB1Q9BRP7 624 aaPredicted RBP21.45■■□□□ 1.02
UPF1-209ENST00000600310 PYM1Q9BRP8 204 aaKnown RBP21.45■■□□□ 1.02
UPF1-209ENST00000600310 GCOM2Q9BZD3 368 aaPredicted RBP21.45■■□□□ 1.02
UPF1-209ENST00000600310 CUEDC2Q9H467 287 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 AGO3Q9H9G7 860 aaKnown RBP21.45■■□□□ 1.02
UPF1-209ENST00000600310 KCNH3Q9ULD8 1083 aa21.45■■□□□ 1.02
UPF1-209ENST00000600310 FAM237AA0A1B0GTK4 181 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 FGBP02675 491 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 DARSP14868 501 aaKnown RBP21.44■■□□□ 1.02
UPF1-209ENST00000600310 EIF4BP23588 611 aaKnown RBP21.44■■□□□ 1.02
UPF1-209ENST00000600310 POU5F1BQ06416 359 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 TFDP1Q14186 410 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 DHX8Q14562 1220 aaKnown RBP21.44■■□□□ 1.02
UPF1-209ENST00000600310 ARSHQ5FYA8 562 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 CNKSR3Q6P9H4 555 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 CHRDL2Q6WN34 429 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 GPBP1Q86WP2 473 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 RNF149Q8NC42 400 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 SEPT8Q92599 483 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 DHX58Q96C10 678 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.44■■□□□ 1.021e-6■■□□□ 13.6
UPF1-209ENST00000600310 IFIH1Q9BYX4 1025 aaKnown RBP21.44■■□□□ 1.02
UPF1-209ENST00000600310 IFT122Q9HBG6 1241 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 HPSEQ9Y251 543 aa21.44■■□□□ 1.02
UPF1-209ENST00000600310 NOC2LQ9Y3T9 749 aaKnown RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms