RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DSPP15924 2871 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 MYO10Q9HD67 2058 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 IGKV6D-21A0A0A0MT36 114 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 MAFGO15525 162 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 CSDE1O75534 798 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 ATG7O95352 703 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 C22orf31O95567 290 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 CALM1P0DP23 149 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 CALM2P0DP24 149 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 CALM3P0DP25 149 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 TECP42680 631 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 RTN1Q16799 776 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 DUSP6Q16828 381 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 LONRF3Q496Y0 759 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 RASEFQ8IZ41 740 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 TMTC2Q8N394 836 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 LRRC71Q8N4P6 559 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 PPP2R3CQ969Q6 453 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 TCF25Q9BQ70 676 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 PHF7Q9BWX1 381 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 RGS18Q9NS28 235 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 FOXD4L1Q9NU39 408 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 PCDHB12Q9Y5F1 795 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 SQORQ9Y6N5 450 aa9.83□□□□□ -0.84
SHKBP1-220ENST00000599716 WDR81Q562E7 1941 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 IGLV3-22A0A075B6J6 115 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 KLF18A0A0U1RQI7 1052 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 GOLGA8AA7E2F4 631 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 GOLGA8BA8MQT2 603 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 NT5C1B-RDH14C9J2C7 533 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 FSCN2O14926 492 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 ZBTB43O43298 467 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 HBP1O60381 514 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 GPR32O75388 356 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 CA8P35219 290 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 ADD1P35611 737 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SREBF1P36956 1147 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 CLK2P49760 499 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 CBX2Q14781 532 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 NAALADL2Q58DX5 795 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 FAM160B1Q5W0V3 765 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SYCE2Q6PIF2 218 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SLC24A5Q71RS6 500 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SGMS1Q86VZ5 419 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 AUTS2Q8WXX7 1259 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SUSD6Q92537 303 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 CASD1Q96PB1 797 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 SH2D3AQ9BRG2 576 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 S1PR5Q9H228 398 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 ATP6V0A4Q9HBG4 840 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 ENTPD7Q9NQZ7 604 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 GABBR1Q9UBS5 961 aa9.82□□□□□ -0.84
SHKBP1-220ENST00000599716 TMEM150BA6NC51 233 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 IPO5O00410 1097 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 CHMP2AO43633 222 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 HOXB3P14651 431 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 CRYBB1P53674 252 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 NLRP11P59045 1033 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 DRP2Q13474 957 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 KCNC3Q14003 757 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 DSC3Q14574 896 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 UGCGQ16739 394 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 ZNF484Q5JVG2 852 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 CLLU1OSQ5K130 101 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 ANKRD54Q6NXT1 300 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 MIS18BP1Q6P0N0 1132 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 KCNT2Q6UVM3 1135 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 SYNE3Q6ZMZ3 975 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 KIAA2013Q8IYS2 634 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 NME8Q8N427 588 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 C12orf76Q8N812 135 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 NEK1Q96PY6 1258 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 ZNF577Q9BSK1 485 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 MTA3Q9BTC8 594 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 SH2B1Q9NRF2 756 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 BARHL2Q9NY43 387 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 AKT3Q9Y243 479 aa9.81□□□□□ -0.84
SHKBP1-220ENST00000599716 GPR182O15218 404 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 EDIL3O43854 480 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 ZNF862O60290 1169 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 FOSP01100 380 aaPredicted RBP9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 ASGR2P07307 311 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 METAP2P50579 478 aaKnown RBP eCLIP9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 FAM189BP81408 668 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 EXOSC10Q01780 885 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 PTPN21Q16825 1174 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 PRR16Q569H4 304 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 EFCAB12Q6NXP0 572 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 PPP1R18Q6NYC8 613 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 TMC7Q7Z402 723 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 ZBTB33Q86T24 672 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 TMEM173Q86WV6 379 aaPredicted RBP9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 HELQQ8TDG4 1101 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 CRYGNQ8WXF5 182 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 MRPS27Q92552 414 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 PHKBQ93100 1093 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 POMKQ9H5K3 350 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 AAASQ9NRG9 546 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 C1orf112Q9NSG2 853 aa9.8□□□□□ -0.84
SHKBP1-220ENST00000599716 RBM28Q9NW13 759 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms