RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NOC3LQ8WTT2 800 aaKnown RBP16.83■□□□□ 0.28
TRIM28-209ENST00000597423 NRCAMQ92823 1304 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 P2RX5Q93086 422 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 NTPCRQ9BSD7 190 aaKnown RBP16.83■□□□□ 0.28
TRIM28-209ENST00000597423 SUGCTQ9HAC7 445 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 CASP8AP2Q9UKL3 1982 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 MAPK8IP1Q9UQF2 711 aa16.83■□□□□ 0.28
TRIM28-209ENST00000597423 UBE4BO95155 1302 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 PHLPP2Q6ZVD8 1323 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 SYNRGQ9UMZ2 1314 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CCDC169A6NNP5 214 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CABYRO75952 493 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CD44P16070 742 aaKnown RBP16.82■□□□□ 0.28
TRIM28-209ENST00000597423 PEX3P56589 373 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CDC42EP1Q00587 391 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 BEX3Q00994 111 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 MAPK7Q13164 816 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 PKN2Q16513 984 aaKnown RBP16.82■□□□□ 0.28
TRIM28-209ENST00000597423 KIAA0753Q2KHM9 967 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 FOXR2Q6PJQ5 311 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 DAW1Q8N136 415 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 ARRDC4Q8NCT1 418 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 ZNF507Q8TCN5 953 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 PSPC1Q8WXF1 523 aaKnown RBP16.82■□□□□ 0.28
TRIM28-209ENST00000597423 HPS3Q969F9 1004 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 LENG1Q96BZ8 264 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CEP89Q96ST8 783 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 POLR3FQ9H1D9 316 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-209ENST00000597423 ST6GALNAC4Q9H4F1 302 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 TMEM206Q9H813 350 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 POLD4Q9HCU8 107 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 KMT5AQ9NQR1 393 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 EXOC7Q9UPT5 735 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 CTNND2Q9UQB3 1225 aa16.82■□□□□ 0.28
TRIM28-209ENST00000597423 LOXHD1Q8IVV2 1947 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 IGKV6-21A0A0C4DH24 114 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 PGK1P00558 417 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 KLRC1P26715 233 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 CST5P28325 142 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 ARL2P36404 184 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 CTCFP49711 727 aaPredicted RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 CHMP4BP1P59074 171 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 IGBP1P78318 339 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 PURAQ00577 322 aaKnown RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 LRRC63Q05C16 580 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 TFDP1Q14186 410 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 LRRC41Q15345 812 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 GRIK4Q16099 956 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 SLC9C1Q4G0N8 1177 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 CENPPQ6IPU0 288 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 EFCAB12Q6NXP0 572 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 CTU1Q7Z7A3 348 aaKnown RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 DHX40Q8IX18 779 aaKnown RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 METTL13Q8N6R0 699 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 C7orf31Q8N865 590 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 GOLGA5Q8TBA6 731 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 TMEM143Q96AN5 459 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 HVCN1Q96D96 273 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 TSEN34Q9BSV6 310 aaKnown RBP16.81■□□□□ 0.28
TRIM28-209ENST00000597423 XPNPEP1Q9NQW7 623 aa16.81■□□□□ 0.28
TRIM28-209ENST00000597423 ZBTB42B2RXF5 422 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 K7ENM7 598 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 HAS3O00219 553 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 CALUO43852 315 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 CDK11BP21127 795 aaKnown RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 NAMPTP43490 491 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 NPTX2P47972 431 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 STX17P56962 302 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 SNRPFP62306 86 aaKnown RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 KNOP1Q1ED39 458 aaKnown RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 BMT2Q1RMZ1 405 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 EPM2AIP1Q7L775 607 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 HAUS6Q7Z4H7 955 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 SYCP3Q8IZU3 236 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 ZNF710Q8N1W2 664 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 KLHDC9Q8NEP7 349 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 DEPTORQ8TB45 409 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 SCFD1Q8WVM8 642 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 KAT2BQ92831 832 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 ACCSQ96QU6 501 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 GPRC5CQ9NQ84 441 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 SUCLA2Q9P2R7 463 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-209ENST00000597423 NFE2L3Q9Y4A8 694 aa16.8■□□□□ 0.28
TRIM28-209ENST00000597423 ADAMTS4O75173 837 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 MYCNP04198 464 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-209ENST00000597423 SMIM10L2AP0DMW4 78 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 SMIM10L2BP0DMW5 78 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 RPL13P26373 211 aaKnown RBP16.79■□□□□ 0.28
TRIM28-209ENST00000597423 NMT1P30419 496 aaKnown RBP16.79■□□□□ 0.28
TRIM28-209ENST00000597423 EFNA5P52803 228 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 KCNA10Q16322 511 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 MTHFD1LQ6UB35 978 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 HS2ST1Q7LGA3 356 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 FAM114A1Q8IWE2 563 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 PRPF31Q8WWY3 499 aaKnown RBP16.79■□□□□ 0.28
TRIM28-209ENST00000597423 MAP7D2Q96T17 732 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 C2orf40Q9H1Z8 148 aa16.79■□□□□ 0.28
TRIM28-209ENST00000597423 CGNQ9P2M7 1197 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms