RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 GAS2O43903 313 aaKnown RBP16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 GPR37L1O60883 481 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 TDP2O95551 362 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 EYA4O95677 639 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 VTNP04004 478 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 ZSCAN20P17040 1043 aaPredicted RBP16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 CLCN3P51790 818 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 PLCB3Q01970 1234 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 HYAL1Q12794 435 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 ADAM15Q13444 863 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 UGCGQ16739 394 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 EFHBQ8N7U6 833 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 KLHL23Q8NBE8 558 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 CDCA3Q99618 268 aaPredicted RBP16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 TPCN1Q9ULQ1 816 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 AKT3Q9Y243 479 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 GINS2Q9Y248 185 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 PLXNA4Q9HCM2 1894 aa16.3■□□□□ 0.2
SMARCE1-216ENST00000580419 C19orf67A6NJJ6 358 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 MAFO75444 373 aaPredicted RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 SKIP12755 728 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 LAG3P18627 525 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 PPM1AP35813 382 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 QARSP47897 775 aaKnown RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 SMAD2Q15796 467 aaKnown RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 SLFN12Q8IYM2 578 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 GJD3Q8N144 294 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 POP1Q99575 1024 aaKnown RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 GCOM2Q9BZD3 368 aaPredicted RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 DAXXQ9UER7 740 aaPredicted RBP16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 VAV3Q9UKW4 847 aa16.29■□□□□ 0.2
SMARCE1-216ENST00000580419 PPFIA3O75145 1194 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 P4HBP07237 508 aaKnown RBP16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 PCBP1Q15365 356 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 INF2Q27J81 1249 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 ZNF598Q86UK7 904 aaKnown RBP16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 ADHFE1Q8IWW8 467 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 C4orf19Q8IY42 314 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 POF1BQ8WVV4 589 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 AIFM3Q96NN9 605 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 CLDND1Q9NY35 253 aa16.28■□□□□ 0.2
SMARCE1-216ENST00000580419 PIEZO1Q92508 2521 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 CHMP2AO43633 222 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ZNF623O75123 536 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 CTDNEP1O95476 244 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ALADP13716 330 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 DNAJB1P25685 340 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 COASYQ13057 564 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 STK3Q13188 491 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 SMAD4Q13485 552 aaKnown RBP16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 EPHA7Q15375 998 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 LETM2Q2VYF4 491 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 TMEM184AQ6ZMB5 413 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ANO5Q75V66 913 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ECHDC2Q86YB7 292 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 LRRC43Q8N309 656 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 TNFRSF25Q93038 417 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 GTF3C6Q969F1 213 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 MSLNLQ96KJ4 702 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 MRPL9Q9BYD2 267 aaKnown RBP16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 CWH43Q9H720 699 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 BRMS1Q9HCU9 246 aa16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ALG13Q9NP73 1137 aaKnown RBP16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 ORC3Q9UBD5 711 aaPredicted RBP16.27■□□□□ 0.2
SMARCE1-216ENST00000580419 TBKBP1A7MCY6 615 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 ASAP2O43150 1006 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 SLC37A4O43826 429 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 IL9P15248 144 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 SFPQP23246 707 aaKnown RBP eCLIP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 RFC5P40937 340 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 AK2P54819 239 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 ZP2Q05996 745 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 FAM102BQ5T8I3 360 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 LRRC71Q8N4P6 559 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 COLGALT1Q8NBJ5 622 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 HAS1Q92839 578 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 CASD1Q96PB1 797 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 UIMC1Q96RL1 719 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 DHX33Q9H6R0 707 aaKnown RBP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 NGRNQ9NPE2 291 aaKnown RBP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 CYP26B1Q9NR63 512 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 TLR9Q9NR96 1032 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 RNF19AQ9NV58 838 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 TYW1Q9NV66 732 aaKnown RBP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 SEPT9Q9UHD8 586 aaPredicted RBP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 PUF60Q9UHX1 559 aaKnown RBP16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 KCNJ14Q9UNX9 436 aa16.26■□□□□ 0.19
SMARCE1-216ENST00000580419 H3BQ06 376 aaPredicted RBP16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 FSCN2O14926 492 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 FGF18O76093 207 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 LYPLA2O95372 231 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 BAG4O95429 457 aaKnown RBP16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 FDPSP14324 419 aaKnown RBP16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 COL9A1P20849 921 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 RAB27AP51159 221 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 POU5F1BQ06416 359 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 SPIRE1Q08AE8 756 aa16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 PAN2Q504Q3 1202 aaKnown RBP16.25■□□□□ 0.19
SMARCE1-216ENST00000580419 TMEM31Q5JXX7 168 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms