RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 HABP4Q5JVS0 413 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TAF2Q6P1X5 1199 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 DNAJC24Q6P3W2 148 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 NOTUMQ6P988 496 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PADI6Q6TGC4 694 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP26C1Q6V0L0 522 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 CTAGE3PQ8IX95 158 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 U2AF1L4Q8WU68 220 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 OSBP2Q969R2 916 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ALKBH8Q96BT7 664 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 DCUN1D1Q96GG9 259 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZFP91Q96JP5 570 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PRMT6Q96LA8 375 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 NSRP1Q9H0G5 558 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TAF1DQ9H5J8 278 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MRPL47Q9HD33 250 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PIH1D3Q9NQM4 214 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZMYND8Q9ULU4 1186 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 CLCA2Q9UQC9 943 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 CTAGE9A4FU28 777 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TMEM247A6NEH6 219 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 OPLAHO14841 1288 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PARNO95453 639 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 NDUFB10O96000 172 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP5DP30049 168 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 RFC5P40937 340 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 HARS2P49590 506 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 CDK17Q00537 523 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TMEM62Q0P6H9 643 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 EPHA10Q5JZY3 1008 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ATAT1Q5SQI0 421 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 THEMIS2Q5TEJ8 643 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TDRD10Q5VZ19 366 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PDXDC1Q6P996 788 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PI16Q6UXB8 463 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 RFX6Q8HWS3 928 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 AOPEPQ8N6M6 819 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 IFT81Q8WYA0 676 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 SEC62Q99442 399 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 SRRTQ9BXP5 876 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 POLR3FQ9H1D9 316 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 BHMT2Q9H2M3 363 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 SP110Q9HB58 689 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 OLA1Q9NTK5 396 aaKnown RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PRMT7Q9NVM4 692 aaPredicted RBP3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 TRPM5Q9NZQ8 1165 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF212Q9UDV6 495 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 SLC25A13Q9UJS0 675 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 PLA2G4CQ9UP65 541 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 RWDD3Q9Y3V2 267 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MAD1L1Q9Y6D9 718 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 MEGF6O75095 1541 aa3.15□□□□□ -1.9
SMCHD1-203ENST00000577880 COL22A1Q8NFW1 1626 aaPredicted RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 TLDC2A0PJX2 215 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CTAGE15A4D2H0 777 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 PRR23AA6NEV1 266 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 SLC15A5A6NIM6 579 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 EIF3CLB5ME19 914 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 GADD45BO75293 160 aaPredicted RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 GJB1P08034 283 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CTAGE8P0CG41 777 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 PRKAR2AP13861 404 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 NR2F2P24468 414 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 PPM1AP35813 382 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 RAB27AP51159 221 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CREMQ03060 361 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF235Q14590 738 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 RBBP5Q15291 538 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF484Q5JVG2 852 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CTAGE6Q86UF2 777 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 TICAM2Q86XR7 235 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CTAGE4Q8IX94 777 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 ARHGAP18Q8N392 663 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 ACRBPQ8NEB7 543 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 RNF217Q8TC41 542 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 CD99L2Q8TCZ2 262 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 NELFBQ8WX92 580 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 VPS50Q96JG6 964 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 SCYL1Q96KG9 808 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF558Q96NG5 402 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 XPO6Q96QU8 1125 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 EIF3CQ99613 913 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 LSM14BQ9BX40 385 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 TRIM54Q9BYV2 358 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 BACH2Q9BYV9 841 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 MAGEB5Q9BZ81 275 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 NGRNQ9NPE2 291 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 NLRC4Q9NPP4 1024 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 PLCB1Q9NQ66 1216 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM217BQ9NTX9 383 aaPredicted RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBE1Q9UJT0 475 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 BAG5Q9UL15 447 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 GUCA1BQ9UMX6 200 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 PCDHB15Q9Y5E8 787 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 SYNRGQ9UMZ2 1314 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 IRS2Q9Y4H2 1338 aa3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 KDM5AP29375 1690 aaKnown RBP3.15□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM47DPA6NHR8 397 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms