RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SLC37A4O43826 429 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 SPAG7O75391 227 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 CTTNQ14247 550 aaKnown RBP12.29□□□□□ -0.44
CLN3-238ENST00000569430 CRYMQ14894 314 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 LONP2Q86WA8 852 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 CFAP61Q8NHU2 1237 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 DCTN4Q9UJW0 460 aa12.29□□□□□ -0.44
CLN3-238ENST00000569430 EXOC1LA0A1B0GW35 172 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 GAS7O60861 476 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 HARSP12081 509 aaKnown RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 FGFR2P21802 821 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 IFI35P80217 286 aaPredicted RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 SEPT2Q15019 361 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 RFX8Q6ZV50 586 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 ZNF571Q7Z3V5 609 aaPredicted RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 SPATA21Q7Z572 469 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 SLFN12Q8IYM2 578 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 RFFLQ8WZ73 363 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 MIEF2Q96C03 454 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 ZBTB10Q96DT7 871 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 NUDCD1Q96RS6 583 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 BSDC1Q9NW68 430 aaPredicted RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 ANAPC4Q9UJX5 808 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 SIK3Q9Y2K2 1263 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 TMEM120BA0PK00 339 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 K7ENM7 598 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 ATP6V1G2O95670 118 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 DLATP10515 647 aaKnown RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 STRN3Q13033 797 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 PREPLQ4J6C6 727 aaPredicted RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 BARGINQ6ZT62 677 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 SLC4A9Q96Q91 983 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 NUDT12Q9BQG2 462 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 CIB2O75838 187 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 KLRK1P26718 216 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 HOXA13P31271 388 aaPredicted RBP12.28□□□□□ -0.44
CLN3-238ENST00000569430 SEMA3FQ13275 785 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 SEMA4AQ9H3S1 761 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 GRIN2DO15399 1336 aa12.28□□□□□ -0.44
CLN3-238ENST00000569430 DPH6Q7L8W6 267 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 PDCD7Q8N8D1 485 aaKnown RBP12.27□□□□□ -0.44
CLN3-238ENST00000569430 CALR3Q96L12 384 aaKnown RBP12.27□□□□□ -0.44
CLN3-238ENST00000569430 LRRC37BQ96QE4 947 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 SYNCQ9H7C4 482 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 EHMT1Q9H9B1 1298 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 AGTPBP1Q9UPW5 1226 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 USH1CQ9Y6N9 552 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 UTRNP46939 3433 aa12.27□□□□□ -0.44
CLN3-238ENST00000569430 HSPA6P17066 643 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 MAPK4P31152 587 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 KYNUQ16719 465 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 ASPRV1Q53RT3 343 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 PPP4R3CPQ6ZMV5 832 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 ZC3H18Q86VM9 953 aaKnown RBP12.27□□□□□ -0.45
CLN3-238ENST00000569430 CTAGE3PQ8IX95 158 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 SPICE1Q8N0Z3 855 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 RILPQ96NA2 401 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 PABPC3Q9H361 631 aaKnown RBP12.27□□□□□ -0.45
CLN3-238ENST00000569430 TYW1Q9NV66 732 aaKnown RBP12.27□□□□□ -0.45
CLN3-238ENST00000569430 USP40Q9NVE5 1235 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 MYH10P35580 1976 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 USP17L10C9JJH3 530 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 F8VZ95 297 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 AGTP01019 485 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 FLT3P36888 993 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 GCLMP48507 274 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 RCN2Q14257 317 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 TTBK2Q6IQ55 1244 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 USP37Q86T82 979 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 SLC17A8Q8NDX2 589 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 PRCCQ92733 491 aaPredicted RBP12.27□□□□□ -0.45
CLN3-238ENST00000569430 C9orf72Q96LT7 481 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 TCHPQ9BT92 498 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 MAD2L2Q9UI95 211 aa12.27□□□□□ -0.45
CLN3-238ENST00000569430 TTC7AQ9ULT0 858 aaPredicted RBP12.27□□□□□ -0.45
CLN3-238ENST00000569430 MED1Q15648 1581 aaPredicted RBP12.26□□□□□ -0.45
CLN3-238ENST00000569430 A0A0G2JND7 137 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 GOLGA8IPA6NC78 632 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 GOLGA8JA6NMD2 632 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 DCDC2CA8MYV0 355 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 MAPK13O15264 365 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 VGLL2Q8N8G2 317 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 C18orf8Q96DM3 657 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 GLT8D2Q9H1C3 349 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 GGA1Q9UJY5 639 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 ARL2BPQ9Y2Y0 163 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 SYNGAP1Q96PV0 1343 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 FAM187AA6NFU0 413 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 DNM1LO00429 736 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 ADAMTS3O15072 1205 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 OPHN1O60890 802 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 PPP1R21Q6ZMI0 780 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 EPM2AIP1Q7L775 607 aaPredicted RBP12.26□□□□□ -0.45
CLN3-238ENST00000569430 TMC3Q7Z5M5 1100 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 FAM118BQ9BPY3 351 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 FAM129AQ9BZQ8 928 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 DHX36Q9H2U1 1008 aaKnown RBP12.26□□□□□ -0.45
CLN3-238ENST00000569430 ALG6Q9Y672 507 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 MST1RQ04912 1400 aa12.26□□□□□ -0.45
CLN3-238ENST00000569430 PNMA6FA0A0J9YX94 578 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms