RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PPP2R5AQ15172 486 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 KNOP1Q1ED39 458 aaKnown RBP15.37■□□□□ 0.05
CLK3-209ENST00000562670 FAM102BQ5T8I3 360 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 GLIS3Q8NEA6 775 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 RAET1EQ8TD07 263 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 TCP11Q8WWU5 503 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 PDLIM2Q96JY6 352 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 TSG101Q99816 390 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 KATNAL1Q9BW62 490 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 SEMA6BQ9H3T3 888 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 TUT1Q9H6E5 874 aaKnown RBP15.37■□□□□ 0.05
CLK3-209ENST00000562670 FANCLQ9NW38 375 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 WBP1LQ9NX94 342 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 TRPC6Q9Y210 931 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 TRAF3IP3Q9Y228 551 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 PHLPP2Q6ZVD8 1323 aa15.37■□□□□ 0.05
CLK3-209ENST00000562670 SIP14410 1827 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 HAS3O00219 553 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 PDXKO00764 312 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 MAGEB2O15479 319 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 FGFR1OPO95684 399 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 ZNF286BP0CG31 522 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 MYBP10242 640 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 RARBP10826 455 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 PRKAR2AP13861 404 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 NAMPTP43490 491 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 SMTNP53814 917 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 PMS1P54277 932 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 SNRPFP62306 86 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 GTF2BQ00403 316 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 FSCN1Q16658 493 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 IER5Q5VY09 327 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 GOLGA5Q8TBA6 731 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 IFT74Q96LB3 600 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 DUSP9Q99956 384 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 SH2D3AQ9BRG2 576 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 POLR3FQ9H1D9 316 aaPredicted RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 SPC25Q9HBM1 224 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 GPRC5CQ9NQ84 441 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 TYW1Q9NV66 732 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 TBC1D7Q9P0N9 293 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 CGNQ9P2M7 1197 aaKnown RBP15.36■□□□□ 0.05
CLK3-209ENST00000562670 ARHGAP28Q9P2N2 729 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 ZMYM2Q9UBW7 1377 aa15.36■□□□□ 0.05
CLK3-209ENST00000562670 TRIM49BA6NDI0 452 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 RRN3P2A6NIE6 340 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 SFI1A8K8P3 1242 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 K7ENM7 598 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 MSCO60682 206 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 C22orf31O95567 290 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 EEF1GP26641 437 aaKnown RBP15.35■□□□□ 0.05
CLK3-209ENST00000562670 HOXD13P35453 343 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 NPTX2P47972 431 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 STX17P56962 302 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 CCDC173Q0VFZ6 552 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 LRRC41Q15345 812 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 TPD52L1Q16890 204 aaPredicted RBP15.35■□□□□ 0.05
CLK3-209ENST00000562670 ANKRD40Q6AI12 368 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 LRRC55Q6ZSA7 311 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 FAM114A1Q8IWE2 563 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 CSGALNACT2Q8N6G5 542 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 LINC01465Q8N7H1 131 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 TMEM161BQ8NDZ6 487 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 LENG1Q96BZ8 264 aaPredicted RBP15.35■□□□□ 0.05
CLK3-209ENST00000562670 MRFAP1L1Q96HT8 127 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 CEP63Q96MT8 703 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 RNPEPQ9H4A4 650 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 TMEM206Q9H813 350 aa15.35■□□□□ 0.05
CLK3-209ENST00000562670 AP5Z1O43299 807 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 CALUO43852 315 aaPredicted RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 ADAMTS4O75173 837 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 INSRRP14616 1297 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 ELNP15502 786 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 CDC25BP30305 580 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 NMT1P30419 496 aaKnown RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 HOXC8P31273 242 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 PEX3P56589 373 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 PURAQ00577 322 aaKnown RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 FKBP3Q00688 224 aaKnown RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 MYBPC2Q14324 1141 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 MXD4Q14582 209 aaPredicted RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 HAUS6Q7Z4H7 955 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 MAP4K3Q8IVH8 894 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 C12orf56Q8IXR9 622 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 RETREG2Q8NC44 543 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 PSPC1Q8WXF1 523 aaKnown RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 BSNDQ8WZ55 320 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 KAT2BQ92831 832 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 CTAGE1Q96RT6 745 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 PPP1R9BQ96SB3 815 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 SAMSN1Q9NSI8 373 aaKnown RBP15.34■□□□□ 0.05
CLK3-209ENST00000562670 NRCAMQ92823 1304 aa15.34■□□□□ 0.05
CLK3-209ENST00000562670 LRRC10BA6NIK2 292 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 ASAP2O43150 1006 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 CBFA2T2O43439 604 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 ZEB2O60315 1214 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 GNA14O95837 355 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 ATP1A3P13637 1013 aa15.33■□□□□ 0.04
CLK3-209ENST00000562670 GLRA2P23416 452 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms