RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 FAM129AQ9BZQ8 928 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 TMEM60Q9H2L4 133 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 ECT2Q9H8V3 914 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 SWAP70Q9UH65 585 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 HDAC9Q9UKV0 1011 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 ZMYND8Q9ULU4 1186 aaPredicted RBP14.43□□□□□ -0.1
CLK3-206ENST00000562078 PCDHA13Q9Y5I0 950 aa14.43□□□□□ -0.1
CLK3-206ENST00000562078 IGKV6D-41A0A0C4DH26 115 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 SMCO2A6NFE2 343 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 MAFGO15525 162 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 RAD51CO43502 376 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 SETSIPP0DME0 302 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 CNGA1P29973 690 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 ECHS1P30084 290 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 ABCD1P33897 745 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 LONP1P36776 959 aaKnown RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 IFI16Q16666 785 aaKnown RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 PDXDC2PQ6P474 469 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 RUFY4Q6ZNE9 571 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 DDX42Q86XP3 938 aaKnown RBP eCLIP14.42□□□□□ -0.1
CLK3-206ENST00000562078 OGFOD1Q8N543 542 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 UBLCP1Q8WVY7 318 aaPredicted RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 TTYH3Q9C0H2 523 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 OCEL1Q9H607 264 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 SUDS3Q9H7L9 328 aaPredicted RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 A0A1W2PQC6 194 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 HLA-DOAP06340 250 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 CXCL9Q07325 125 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 ITIH4Q14624 930 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 PIGWQ7Z7B1 504 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 ZFPM1Q8IX07 1006 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 PROCA1Q8NCQ7 364 aaPredicted RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 EEF2KMTQ96G04 330 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 RPS6KC1Q96S38 1066 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 FHDC1Q9C0D6 1143 aaPredicted RBP14.42□□□□□ -0.1
CLK3-206ENST00000562078 GOPCQ9HD26 462 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 GDAQ9Y2T3 454 aa14.42□□□□□ -0.1
CLK3-206ENST00000562078 PP2D1A8MPX8 630 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 BUB1O43683 1085 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 MYL1P05976 194 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 PCK1P35558 622 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 ERVK-9P63128 1117 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 ZBED6P86452 979 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 TCP10Q12799 353 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 ASPRV1Q53RT3 343 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 CIAPIN1Q6FI81 312 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 DTHD1Q6ZMT9 781 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 KLHL7Q8IXQ5 586 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 LRRC34Q8IZ02 419 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 C6orf50Q9HD87 102 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 GPCPD1Q9NPB8 672 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 UTRNP46939 3433 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 FAM196BA6NMK8 535 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 TTLL1O95922 423 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 SHBGP04278 402 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 FLT3P36888 993 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 KLHDC7AQ5VTJ3 777 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 TMEM154Q6P9G4 183 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 KRT25Q7Z3Z0 450 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 SYCP3Q8IZU3 236 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 PHC3Q8NDX5 983 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 MTRQ99707 1265 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 NEUROG2Q9H2A3 272 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 MMADHCQ9H3L0 296 aaPredicted RBP14.41□□□□□ -0.1
CLK3-206ENST00000562078 RIOX1Q9H6W3 641 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 TDRD3Q9H7E2 651 aaKnown RBP14.41□□□□□ -0.1
CLK3-206ENST00000562078 DNAAF2Q9NVR5 837 aaKnown RBP14.41□□□□□ -0.1
CLK3-206ENST00000562078 NKX1-2Q9UD57 310 aaPredicted RBP14.41□□□□□ -0.1
CLK3-206ENST00000562078 TRIM33Q9UPN9 1127 aa14.41□□□□□ -0.1
CLK3-206ENST00000562078 SMARCA1P28370 1054 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 GNA11P29992 359 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 RFC5P40937 340 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 STAT6P42226 847 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 MSH2P43246 934 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 PMS1P54277 932 aaKnown RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 NONOQ15233 471 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLK3-206ENST00000562078 LETM2Q2VYF4 491 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 KRT71Q3SY84 523 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 AGBL2Q5U5Z8 902 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 KLHL29Q96CT2 875 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 MMTAG2Q9BU76 263 aaKnown RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 FBXL5Q9UKA1 691 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 LTBP3Q9NS15 1303 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 ASAP2O43150 1006 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 MMEP08473 750 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 CHN1P15882 459 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 MAGEA10P43363 369 aaPredicted RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 MRPS35P82673 323 aaKnown RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 ZSCAN29Q8IWY8 852 aaPredicted RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 REXO1Q8N1G1 1221 aaKnown RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 SLC17A8Q8NDX2 589 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 MTMR8Q96EF0 704 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 PRMT6Q96LA8 375 aaPredicted RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 PCMTD1Q96MG8 357 aaPredicted RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 PYM1Q9BRP8 204 aaKnown RBP14.4□□□□□ -0.1
CLK3-206ENST00000562078 DNAJC18Q9H819 358 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 SAMD15Q9P1V8 674 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 PNMA2Q9UL42 364 aa14.4□□□□□ -0.1
CLK3-206ENST00000562078 CCNT1O60563 726 aaKnown RBP14.39□□□□□ -0.11
CLK3-206ENST00000562078 SNHG28P0DPA3 235 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms