RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CDK5RAP3Q96JB5 506 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 MXRA8Q9BRK3 442 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 SDF4Q9BRK5 362 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 DDX19AQ9NUU7 478 aaKnown RBP13.17□□□□□ -0.3
LDLR-212ENST00000560467 LRWD1Q9UFC0 647 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 PRKAG3Q9UGI9 489 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 FBXO2Q9UK22 296 aaPredicted RBP13.17□□□□□ -0.3
LDLR-212ENST00000560467 KCNH3Q9ULD8 1083 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 FAM50BQ9Y247 325 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 NRCAMQ92823 1304 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 LINC01565O15544 149 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 GADD45BO75293 160 aaPredicted RBP13.16□□□□□ -0.3
LDLR-212ENST00000560467 TCF7P36402 384 aaPredicted RBP13.16□□□□□ -0.3
LDLR-212ENST00000560467 TECP42680 631 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 SYKP43405 635 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 SMAD2Q15796 467 aaKnown RBP13.16□□□□□ -0.3
LDLR-212ENST00000560467 KANK3Q6NY19 840 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 TAF2Q6P1X5 1199 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 HFE2Q6ZVN8 426 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 POTEDQ86YR6 584 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 LINC01599Q8WXQ3 324 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 CALML4Q96GE6 196 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 FBXL18Q96ME1 805 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 SENP7Q9BQF6 1050 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 ZNF577Q9BSK1 485 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 CSRNP2Q9H175 543 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 TTC12Q9H892 705 aaPredicted RBP13.16□□□□□ -0.3
LDLR-212ENST00000560467 TBC1D22BQ9NU19 505 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 PKD2L1Q9P0L9 805 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 USP25Q9UHP3 1055 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 MUTYHQ9UIF7 546 aa13.16□□□□□ -0.3
LDLR-212ENST00000560467 MEIS1O00470 390 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 ENPP3O14638 875 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 MBTPS2O43462 519 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 SLC26A4O43511 780 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 GAS7O60861 476 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 ATP9AO75110 1047 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 RB1P06400 928 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 KCNA2P16389 499 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 MRE11P49959 708 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 FXR2P51116 673 aaKnown RBP eCLIP13.15□□□□□ -0.38e-9■□□□□ 10.8
LDLR-212ENST00000560467 NHLH1Q02575 133 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 BTG3Q14201 252 aaPredicted RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 GRIK4Q16099 956 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 FBXO47Q5MNV8 452 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 RESP18Q5W5W9 173 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 HAUS3Q68CZ6 603 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 CEP57L1Q8IYX8 460 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 C4orf32Q8N8J7 132 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 IQUBQ8NA54 791 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 GIMAP8Q8ND71 665 aaPredicted RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 DNAJB3Q8WWF6 145 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 CRYGNQ8WXF5 182 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 CLP1Q92989 425 aaKnown RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 GPRASP2Q96D09 838 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 MBOAT7Q96N66 472 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 CLIC6Q96NY7 704 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 MTMR9Q96QG7 549 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 LMAN2LQ9H0V9 348 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 IGFLR1Q9H665 355 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 AGO3Q9H9G7 860 aaKnown RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 ALG13Q9NP73 1137 aaKnown RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 JADE2Q9NQC1 790 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 TUBE1Q9UJT0 475 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 CDY2AQ9Y6F7 541 aa13.15□□□□□ -0.3
LDLR-212ENST00000560467 MRPL42Q9Y6G3 142 aaKnown RBP13.15□□□□□ -0.3
LDLR-212ENST00000560467 A0A1B0GVL5 298 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 GSTTP1A0A1W2PQM5 241 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 MBLAC1A4D2B0 266 aaPredicted RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 FAM86B1E9PN63 330 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 IPO5O00410 1097 aaKnown RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 NCK2O43639 380 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 SLC37A4O43826 429 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 FAM86B2P0C5J1 330 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 ITGB5P18084 799 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 CD52P31358 61 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 IGBP1P78318 339 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 SMAD4Q13485 552 aaKnown RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 CAMK1Q14012 370 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 MARCH8Q5T0T0 291 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 AXDND1Q5T1B0 1012 aaPredicted RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 CCDC183Q5T5S1 534 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 LRCH2Q5VUJ6 765 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 CAVIN1Q6NZI2 390 aaKnown RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 ZNF689Q96CS4 500 aaPredicted RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 RIT2Q99578 217 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 TEKT3Q9BXF9 490 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 FAM49AQ9H0Q0 323 aaPredicted RBP13.14□□□□□ -0.31
LDLR-212ENST00000560467 TMEM60Q9H2L4 133 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 TNMDQ9H2S6 317 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 RWDD3Q9Y3V2 267 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 UBIAD1Q9Y5Z9 338 aa13.14□□□□□ -0.31
LDLR-212ENST00000560467 MYH7BA7E2Y1 1941 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 DGKIO75912 1065 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 PFKFB1P16118 471 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 DNAJB1P25685 340 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 MRPS6P82932 125 aaKnown RBP13.13□□□□□ -0.31
LDLR-212ENST00000560467 RRAGBQ5VZM2 374 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 TSHZ1Q6ZSZ6 1077 aa13.13□□□□□ -0.31
LDLR-212ENST00000560467 RSPH3Q86UC2 560 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms