RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 P4HBP07237 508 aaKnown RBP15.79■□□□□ 0.12
TPM1-223ENST00000560445 SRGAP2BP0DMP2 458 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 DARSP14868 501 aaKnown RBP15.79■□□□□ 0.12
TPM1-223ENST00000560445 RFC5P40937 340 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 GPC3P51654 580 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 COL19A1Q14993 1142 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 PAN2Q504Q3 1202 aaKnown RBP15.79■□□□□ 0.12
TPM1-223ENST00000560445 B3GNT9Q6UX72 402 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 EP400NLQ6ZTU2 488 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 LRRC43Q8N309 656 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 LRRC71Q8N4P6 559 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 NEK9Q8TD19 979 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 TMEM40Q8WWA1 233 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 AIFM3Q96NN9 605 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 MRPL9Q9BYD2 267 aaKnown RBP15.79■□□□□ 0.12
TPM1-223ENST00000560445 TMEM117Q9H0C3 514 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 ADAMTS10Q9H324 1103 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 KCNMB3Q9NPA1 279 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 PUF60Q9UHX1 559 aaKnown RBP15.79■□□□□ 0.12
TPM1-223ENST00000560445 PLAGL2Q9UPG8 496 aa15.79■□□□□ 0.12
TPM1-223ENST00000560445 TCF20Q9UGU0 1960 aaKnown RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 GRM6O15303 877 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 IBSPP21815 317 aaPredicted RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 RAB27AP51159 221 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 FAM189BP81408 668 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 BMS1Q14692 1282 aaKnown RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 UGCGQ16739 394 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 PTCRAQ6ISU1 281 aaPredicted RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 TCP11Q8WWU5 503 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 CCDC43Q96MW1 224 aaKnown RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 PPP1R16BQ96T49 567 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 POP1Q99575 1024 aaKnown RBP15.78■□□□□ 0.12
TPM1-223ENST00000560445 CDHR5Q9HBB8 845 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 CLDND1Q9NY35 253 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 PRKAG3Q9UGI9 489 aa15.78■□□□□ 0.12
TPM1-223ENST00000560445 SLC37A4O43826 429 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 MAFO75444 373 aaPredicted RBP15.77■□□□□ 0.12
TPM1-223ENST00000560445 LINC00271P0C7V0 271 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 POLGP54098 1239 aaPredicted RBP15.77■□□□□ 0.12
TPM1-223ENST00000560445 DSC3Q14574 896 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 EPHA7Q15375 998 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 C4orf19Q8IY42 314 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 THNSL1Q8IYQ7 743 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 KLHL23Q8NBE8 558 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 CDCA3Q99618 268 aaPredicted RBP15.77■□□□□ 0.12
TPM1-223ENST00000560445 ZSWIM4Q9H7M6 989 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 CYP26B1Q9NR63 512 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 SUCLA2Q9P2R7 463 aaPredicted RBP15.77■□□□□ 0.12
TPM1-223ENST00000560445 VAV3Q9UKW4 847 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 LZTS1Q9Y250 596 aa15.77■□□□□ 0.12
TPM1-223ENST00000560445 SPTBN5Q9NRC6 3674 aaKnown RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 IGKV6-21A0A0C4DH24 114 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 EDIL3O43854 480 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 MGEA5O60502 916 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 KRT17Q04695 432 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 ORC2Q13416 577 aaPredicted RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 PCBP1Q15365 356 aaKnown RBP eCLIP15.76■□□□□ 0.114e-6■□□□□ 10.4
TPM1-223ENST00000560445 CALCRLQ16602 461 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 PSPC1Q8WXF1 523 aaKnown RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 CEP170P1Q96L14 293 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 LLPHQ9BRT6 129 aaKnown RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 ALG13Q9NP73 1137 aaKnown RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 STK39Q9UEW8 545 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 LIMCH1Q9UPQ0 1083 aa15.76■□□□□ 0.11
TPM1-223ENST00000560445 FNDC1Q4ZHG4 1894 aaPredicted RBP15.76■□□□□ 0.11
TPM1-223ENST00000560445 KIAA1671Q9BY89 1806 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 A0A0U1RQF3 1178 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 GRXCR2A6NFK2 248 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 ASAP2O43150 1006 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 CTDNEP1O95476 244 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 ITGB1P05556 798 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 HMGN5P82970 282 aaKnown RBP15.75■□□□□ 0.11
TPM1-223ENST00000560445 NCBP1Q09161 790 aaKnown RBP15.75■□□□□ 0.11
TPM1-223ENST00000560445 ME3Q16798 604 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 NCAPH2Q6IBW4 605 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 ECHDC2Q86YB7 292 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 RHPN2Q8IUC4 686 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 NSUN7Q8NE18 718 aaKnown RBP15.75■□□□□ 0.11
TPM1-223ENST00000560445 SPPL3Q8TCT6 385 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 MICAL1Q8TDZ2 1067 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 POF1BQ8WVV4 589 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 ZSCAN31Q96LW9 406 aaPredicted RBP15.75■□□□□ 0.11
TPM1-223ENST00000560445 ZNF558Q96NG5 402 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 LXNQ9BS40 222 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 TRAIPQ9BWF2 469 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 TLR9Q9NR96 1032 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 PCDHA12Q9UN75 941 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 KIF3AQ9Y496 699 aa15.75■□□□□ 0.11
TPM1-223ENST00000560445 REV3LO60673 3130 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 NEMFO60524 1076 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 FGF18O76093 207 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 YWHABP31946 246 aaKnown RBP15.74■□□□□ 0.11
TPM1-223ENST00000560445 SSTR3P32745 418 aaPredicted RBP15.74■□□□□ 0.11
TPM1-223ENST00000560445 NDUFV1P49821 464 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 TWF2Q6IBS0 349 aaKnown RBP15.74■□□□□ 0.11
TPM1-223ENST00000560445 GLB1LQ6UWU2 654 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 ANO5Q75V66 913 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 CATSPER4Q7RTX7 472 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 FAM178BQ8IXR5 827 aa15.74■□□□□ 0.11
TPM1-223ENST00000560445 DIS3L2Q8IYB7 885 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms