RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	RPL10L	Q96L21	214 aa	Known RBP	4.62	□□□□□ -1.67
SPG11-222	ENST00000560435	MNT	Q99583	582 aa		4.62	□□□□□ -1.67
SPG11-222	ENST00000560435	TCF25	Q9BQ70	676 aa		4.62	□□□□□ -1.67
SPG11-222	ENST00000560435		A0A0A6YYK5	440 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	C2orf78	A6NCI8	922 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	RASSF10	A6NK89	507 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	GRXCR1	A8MXD5	290 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	GOLGA6L22	H0YM25	854 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	SCD	O00767	359 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	KLF4	O43474	513 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	ABHD16A	O95870	558 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	C6orf222	P0C671	652 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	DNM2	P50570	870 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	BPIFB4	P59827	614 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	SUMO1	P63165	101 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	FKBP15	Q5T1M5	1219 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	C1QL3	Q5VWW1	255 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	MFSD5	Q6N075	450 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	ADGRG3	Q86Y34	549 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	MCF2L2	Q86YR7	1114 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	SPATA9	Q9BWV2	254 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	IL23A	Q9NPF7	189 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	SAE1	Q9UBE0	346 aa	Predicted RBP	4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	DENND2A	Q9ULE3	1009 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	RBM8A	Q9Y5S9	174 aa	Known RBP	4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	HS3ST4	Q9Y661	456 aa		4.61	□□□□□ -1.67
SPG11-222	ENST00000560435	UBE2QL1	A1L167	161 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	NR4A1	P22736	598 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	CD38	P28907	300 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	ARID5A	Q03989	594 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	TCIRG1	Q13488	830 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	HECTD2	Q5U5R9	776 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	NAIF1	Q69YI7	327 aa	Predicted RBP	4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	FSTL4	Q6MZW2	842 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	KCNV1	Q6PIU1	500 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	GLCCI1	Q86VQ1	547 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	ZC3H7A	Q8IWR0	971 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	CISD2	Q8N5K1	135 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	DLG3	Q92796	817 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	TOR3A	Q9H497	397 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	B3GALT1	Q9Y5Z6	326 aa		4.6	□□□□□ -1.67
SPG11-222	ENST00000560435	TRBV23-1	A0A0A0MS06	115 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	GOLGA8B	A8MQT2	603 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	INO80B-WBP1	J3KQ70	363 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	B3GALT2	O43825	422 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	MFAP3L	O75121	409 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	IPO13	O94829	963 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	ERCC5	P28715	1186 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	GABRE	P78334	506 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	ALDH6A1	Q02252	535 aa	Known RBP	4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	STRIP1	Q5VSL9	837 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	MDGA1	Q8NFP4	955 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	FOXB1	Q99853	325 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	INO80B	Q9C086	356 aa	Predicted RBP	4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	SYNPO2L	Q9H987	977 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	PCDHA9	Q9Y5H5	950 aa		4.59	□□□□□ -1.67
SPG11-222	ENST00000560435	COL4A3	Q01955	1670 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	ADCY3	O60266	1144 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	VSIG10L2	P0DP72	767 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	ZNF37A	P17032	561 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	CATSPERE	Q5SY80	951 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	OLFML1	Q6UWY5	402 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	MB21D1	Q8N884	522 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	OR5AN1	Q8NGI8	311 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	NKD2	Q969F2	451 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	PGBD4	Q96DM1	585 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	CDC6	Q99741	560 aa		4.58	□□□□□ -1.68
SPG11-222	ENST00000560435	CRTAM	O95727	393 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	TAP1	Q03518	808 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	DGKD	Q16760	1214 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	PLEKHG4	Q58EX7	1191 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	DCAF17	Q5H9S7	520 aa	Predicted RBP	4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	CLEC14A	Q86T13	490 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	ZNF512	Q96ME7	567 aa	Predicted RBP	4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	MAGEL2	Q9UJ55	1249 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	RCAN3	Q9UKA8	241 aa		4.57	□□□□□ -1.68
SPG11-222	ENST00000560435	UNCX	A6NJT0	531 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	TOX4	O94842	621 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	JUN	P05412	331 aa	Known RBP	4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	RAB33A	Q14088	237 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	TMEM132B	Q14DG7	1078 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	FAM209A	Q5JX71	171 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	PLA2G15	Q8NCC3	412 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	BEND2	Q8NDZ0	799 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	IPO9	Q96P70	1041 aa	Known RBP	4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	TINF2	Q9BSI4	451 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	CELF4	Q9BZC1	486 aa	Known RBP	4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	COX11	Q9Y6N1	276 aa		4.56	□□□□□ -1.68
SPG11-222	ENST00000560435	SLC12A8	A0AV02	714 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	KIAA0355	O15063	1070 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	TRIM24	O15164	1050 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	HIP1R	O75146	1068 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	RASGRP1	O95267	797 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	CDK4	P11802	303 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	CLK3	P49761	638 aa	Known RBP	4.55	□□□□□ -1.68

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