RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 KSR1Q8IVT5 923 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 TMEM40Q8WWA1 233 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 PRPF31Q8WWY3 499 aaKnown RBP22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 OSMRQ99650 979 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 MTRQ99707 1265 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 NT5C3AQ9H0P0 336 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 BHMT2Q9H2M3 363 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 SQORQ9Y6N5 450 aa22.58■■□□□ 1.21
TSPAN3-207ENST00000559494 GAS2O43903 313 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 USO1O60763 962 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 KARSQ15046 597 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 ZNF710Q8N1W2 664 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 KCTD17Q8N5Z5 321 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 LRRC15Q8TF66 581 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 SEPT8Q92599 483 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 CDK5RAP3Q96JB5 506 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 RNPC3Q96LT9 517 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 ATP6V0A4Q9HBG4 840 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 ACTN1P12814 892 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 CYP11B2P19099 503 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 ARL2P36404 184 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 TSHZ1Q6ZSZ6 1077 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 RHPN2Q8IUC4 686 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 USP38Q8NB14 1042 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 TCP11Q8WWU5 503 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 SYMPKQ92797 1274 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 CALML4Q96GE6 196 aa22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 IFIH1Q9BYX4 1025 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 NOC2LQ9Y3T9 749 aaKnown RBP22.57■■□□□ 1.2
TSPAN3-207ENST00000559494 A0A087WZ62 844 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 CD52P31358 61 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 CDC42EP1Q00587 391 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 AXDND1Q5T1B0 1012 aaPredicted RBP22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 MAEAQ7L5Y9 396 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 KCNG4Q8TDN1 519 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 PSPC1Q8WXF1 523 aaKnown RBP22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 FDXACB1Q9BRP7 624 aaPredicted RBP22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 GPRC5CQ9NQ84 441 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 PADI3Q9ULW8 664 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 PCDHA7Q9UN72 937 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 ATP6V1DQ9Y5K8 247 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 COL4A3BPQ9Y5P4 624 aa22.56■■□□□ 1.2
TSPAN3-207ENST00000559494 LAMA3Q16787 3333 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 ASAP2O43150 1006 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 CUTAO60888 179 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 PLCG1P19174 1290 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 LAMTOR4Q0VGL1 99 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 IKBKEQ14164 716 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 HABP4Q5JVS0 413 aaKnown RBP22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 SYT2Q8N9I0 419 aaPredicted RBP22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 NLRP7Q8WX94 980 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 POLD4Q9HCU8 107 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 BLOC1S4Q9NUP1 217 aa22.55■■□□□ 1.2
TSPAN3-207ENST00000559494 ABHD14A-ACY1A0A1B0GW23 586 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 ZBBXA8MT70 800 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 RPS6KA5O75582 802 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 BAIAP3O94812 1187 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 SRGAP2CP0DJJ0 459 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 NCLP19338 710 aaKnown RBP22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 EIF4BP23588 611 aaKnown RBP22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 KRT85P78386 507 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 RINT1Q6NUQ1 792 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 ZNF410Q86VK4 478 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 FAM228AQ86W67 206 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 MCPH1Q8NEM0 835 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 ASAP3Q8TDY4 903 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 LEO1Q8WVC0 666 aaPredicted RBP22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 ERVK-5Q9HDB9 667 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 ST3GAL5Q9UNP4 418 aa22.54■■□□□ 1.2
TSPAN3-207ENST00000559494 CSDE1O75534 798 aaKnown RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 PLA2G4BP0C869 781 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 DARSP14868 501 aaKnown RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 GLRA2P23416 452 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 SLC12A3P55017 1021 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 NFX1Q12986 1120 aaKnown RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 LRIT3Q3SXY7 679 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 FAM102BQ5T8I3 360 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 SHC4Q6S5L8 630 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 C1orf186Q6ZWK4 172 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 APBB2Q92870 758 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 NLRP4Q96MN2 994 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 SCLT1Q96NL6 688 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 RUSC1Q9BVN2 902 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 PANK2Q9BZ23 570 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 GCOM2Q9BZD3 368 aaPredicted RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 POLR3FQ9H1D9 316 aaPredicted RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 MTIF3Q9H2K0 278 aaKnown RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 TMX1Q9H3N1 280 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 IFT122Q9HBG6 1241 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 CIZ1Q9ULV3 898 aaPredicted RBP22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 SLC4A7Q9Y6M7 1214 aa22.53■■□□□ 1.2
TSPAN3-207ENST00000559494 A0A087X0B3 334 aa22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 SSBP05455 408 aaKnown RBP eCLIP22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 ME1P48163 572 aa22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 WDR5P61964 334 aaKnown RBP22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 PAK2Q13177 524 aa22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 MXD4Q14582 209 aaPredicted RBP22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 FAM109BQ6ICB4 259 aaPredicted RBP22.52■■□□□ 1.2
TSPAN3-207ENST00000559494 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.52■■□□□ 1.24e-8■■■□□ 17.1
TSPAN3-207ENST00000559494 RTN4RL1Q86UN2 441 aaPredicted RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms