RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ADCY3O60266 1144 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 TMCC2O75069 709 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 TRPA1O75762 1119 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 GSSP48637 474 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 GBE1Q04446 702 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 ZC3H18Q86VM9 953 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 CAND1Q86VP6 1230 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 SFR1Q86XK3 245 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 HACE1Q8IYU2 909 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 CAGE1Q8TC20 777 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 PYROXD1Q8WU10 500 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 NELFBQ8WX92 580 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 OTUD5Q96G74 571 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 STK33Q9BYT3 514 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 SNX25Q9H3E2 840 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 TUT1Q9H6E5 874 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 EPB41L4AQ9HCS5 686 aaPredicted RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 DDX56Q9NY93 547 aaKnown RBP9.09□□□□□ -0.95
USP3-211ENST00000559257 HMGXB4Q9UGU5 601 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 CFL2Q9Y281 166 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 USP20Q9Y2K6 914 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 CAPN6Q9Y6Q1 641 aa9.09□□□□□ -0.95
USP3-211ENST00000559257 IQANK1A0A1B0GTG1 560 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 A6NJR5 290 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CENPBD1B2RD01 187 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 GOLGA8MH3BSY2 632 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 TSPAN9O75954 239 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CRYZL1O95825 349 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 OAS1P00973 400 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 MYCP01106 439 aaPredicted RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 ABCB1P08183 1280 aaPredicted RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 SLC3A2P08195 630 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 WEE1P30291 646 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 PRCPP42785 496 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 BCAP31P51572 246 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CCR3P51677 355 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 RPS3AP61247 264 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 AMPD3Q01432 767 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 LAPTM5Q13571 262 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 Q3C1V9 767 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CEP78Q5JTW2 689 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 RESP18Q5W5W9 173 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 SPOPLQ6IQ16 392 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 BEND5Q7L4P6 421 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 ANKMY2Q8IV38 441 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 IFT20Q8IY31 132 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 ANGPTL6Q8NI99 470 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 HCAR2Q8TDS4 363 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 TSR2Q969E8 191 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 VTI1AQ96AJ9 217 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 NEURL2Q9BR09 285 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 SERHL2Q9H4I8 314 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 HAUS4Q9H6D7 363 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 C19orf44Q9H6X5 657 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 PLGRKTQ9HBL7 147 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CYLDQ9NQC7 956 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 GIN1Q9NXP7 522 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 SELENONQ9NZV5 590 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 TRIM10Q9UDY6 481 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 PCDHB4Q9Y5E5 795 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 NEDD4P46934 1319 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 QRICH2Q9H0J4 1663 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 MYH13Q9UKX3 1938 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 PFDN6O15212 129 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 ZNF12P17014 697 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 RASA1P20936 1047 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 NLRP6P59044 892 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 KRT83P78385 493 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 EZH2Q15910 746 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 HSP90AA5PQ58FG0 334 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 BTBD8Q5XKL5 378 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 DTHD1Q6ZMT9 781 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 RELL1Q8IUW5 271 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 LZTR1Q8N653 840 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CALML6Q8TD86 181 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 LRRC8CQ8TDW0 803 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 HSPBAP1Q96EW2 488 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 CIB1Q99828 191 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 XAB2Q9HCS7 855 aaKnown RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 POLMQ9NP87 494 aaPredicted RBP9.08□□□□□ -0.96
USP3-211ENST00000559257 GDF3Q9NR23 364 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 ARMC1Q9NVT9 282 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 AOX1Q06278 1338 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 SALL3Q9BXA9 1300 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 PPLO60437 1756 aa9.08□□□□□ -0.96
USP3-211ENST00000559257 SPDYE16A6NNV3 312 aaPredicted RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 H0Y3Z8 333 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ENPP3O14638 875 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 KRT6AP02538 564 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 KRT6BP04259 564 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ENO2P09104 434 aaPredicted RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 KRT6CP48668 564 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 POLD2P49005 469 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 GALNT1Q10472 559 aaPredicted RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 AP1B1Q10567 949 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 PHKG1Q16816 387 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ANO4Q32M45 955 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 ZC2HC1CQ53FD0 456 aaPredicted RBP9.07□□□□□ -0.96
USP3-211ENST00000559257 ODF2Q5BJF6 829 aa9.07□□□□□ -0.96
USP3-211ENST00000559257 MAP3K21Q5TCX8 1036 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms