RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 MTHFRP42898 656 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 CLCN3P51790 818 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 FUT2Q10981 343 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 RTN1Q16799 776 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 JAKMIP3Q5VZ66 844 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 EFCAB12Q6NXP0 572 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 SMAP1Q8IYB5 467 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-223ENST00000556689 RNF169Q8NCN4 708 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 MAP7D2Q96T17 732 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 ADAMTS10Q9H324 1103 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 POMKQ9H5K3 350 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 AKT3Q9Y243 479 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 PCDHA10Q9Y5I2 948 aa14.35□□□□□ -0.11
SHMT2-223ENST00000556689 FNDC1Q4ZHG4 1894 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-223ENST00000556689 IGLV3-22A0A075B6J6 115 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 A0A0U1RQF3 1178 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 C2CD4DB7Z1M9 353 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 ZBTB43O43298 467 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 CLASP2O75122 1294 aaKnown RBP14.34□□□□□ -0.11
SHMT2-223ENST00000556689 BRD1O95696 1058 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 EOMESO95936 686 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 ALDH7A1P49419 539 aaKnown RBP14.34□□□□□ -0.11
SHMT2-223ENST00000556689 SLC39A11Q8N1S5 342 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 TMEM87AQ8NBN3 555 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 NRBP2Q9NSY0 501 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 GABBR1Q9UBS5 961 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 TCEAL9Q9UHQ7 104 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 CDH22Q9UJ99 828 aa14.34□□□□□ -0.11
SHMT2-223ENST00000556689 CA8P35219 290 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 SETQ01105 290 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-223ENST00000556689 FOXK2Q01167 660 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 CLLU1OSQ5K130 101 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 ATAT1Q5SQI0 421 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 MCTP2Q6DN12 878 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 ZDHHC14Q8IZN3 488 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 PLCD3Q8N3E9 789 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 CRYGNQ8WXF5 182 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 FAM167AQ96KS9 214 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 ESYT1Q9BSJ8 1104 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 LIMD1Q9UGP4 676 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 BRPF3Q9ULD4 1205 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 SAMM50Q9Y512 469 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 ZDBF2Q9HCK1 2354 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 LOXHD1Q8IVV2 1947 aa14.33□□□□□ -0.12
SHMT2-223ENST00000556689 NT5C1B-RDH14C9J2C7 533 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 METAP2P50579 478 aaKnown RBP eCLIP14.32□□□□□ -0.121e-6■■■□□ 18.9
SHMT2-223ENST00000556689 BCAR1P56945 870 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 EXOSC10Q01780 885 aaKnown RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 RARS2Q5T160 578 aaKnown RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 RNF20Q5VTR2 975 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 ASTLQ6HA08 431 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 DHX32Q7L7V1 743 aaKnown RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 ASCL5Q7RTU5 278 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 ZNF598Q86UK7 904 aaKnown RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 LRRC71Q8N4P6 559 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 TMEM105Q8N8V8 129 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 HELQQ8TDG4 1101 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 MRPL9Q9BYD2 267 aaKnown RBP14.32□□□□□ -0.12
SHMT2-223ENST00000556689 ANO2Q9NQ90 1003 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 DACT1Q9NYF0 836 aa14.32□□□□□ -0.12
SHMT2-223ENST00000556689 GOLGA8AA7E2F4 631 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 GOLGA8BA8MQT2 603 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 ASGR2P07307 311 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 WEE2P0C1S8 567 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 DARSP14868 501 aaKnown RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 NBL1P41271 181 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 GPC3P51654 580 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 CLCN5P51795 746 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 PFKFB3Q16875 520 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 PRR16Q569H4 304 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 VPS52Q8N1B4 723 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 LINC01465Q8N7H1 131 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 C12orf76Q8N812 135 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 TDRD5Q8NAT2 981 aaKnown RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 TMEM169Q96HH4 297 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 ZNF668Q96K58 619 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 SCLT1Q96NL6 688 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 MFSD1Q9H3U5 465 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 SMOC2Q9H3U7 446 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 FAM217BQ9NTX9 383 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 DZANK1Q9NVP4 752 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 DBR1Q9UK59 544 aaKnown RBP14.31□□□□□ -0.12
SHMT2-223ENST00000556689 USTQ9Y2C2 406 aa14.31□□□□□ -0.12
SHMT2-223ENST00000556689 KMT2EQ8IZD2 1858 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 CARNS1A5YM72 827 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 WDR64B1ANS9 1081 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 OATP04181 439 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 FGFR4P22455 802 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 CDC27P30260 824 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 CDC42EP1Q00587 391 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 GIT2Q14161 759 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 KIAA1841Q6NSI8 718 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 KANK3Q6NY19 840 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 NLRP7Q8WX94 980 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 RSPH1Q8WYR4 309 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 TCEANC2Q96MN5 208 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 ZMYND12Q9H0C1 365 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 C6orf50Q9HD87 102 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 CHST12Q9NRB3 414 aa14.3□□□□□ -0.12
SHMT2-223ENST00000556689 DISC1Q9NRI5 854 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms