RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 DRC1Q96MC2 740 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 NTPCRQ9BSD7 190 aaKnown RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 C17orf75Q9HAS0 396 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 SUCLA2Q9P2R7 463 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 ODF2LQ9ULJ1 636 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 NOD1Q9Y239 953 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 HIP1RO75146 1068 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 ZNF131P52739 623 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 SOX10P56693 466 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 POU5F1BQ06416 359 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 RAD51AP2Q09MP3 1159 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 DPYDQ12882 1025 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 DRP2Q13474 957 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 CUL4BQ13620 913 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 POSTNQ15063 836 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 LRRC26Q2I0M4 334 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 FAM102BQ5T8I3 360 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 RUFY4Q6ZNE9 571 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 RSPH3Q86UC2 560 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 GRAMD1CQ8IYS0 662 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 DAW1Q8N136 415 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 LRRC71Q8N4P6 559 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 SPATA20Q8TB22 786 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 DNAJB3Q8WWF6 145 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 PSPC1Q8WXF1 523 aaKnown RBP11.3□□□□□ -0.6
SYNE2-215ENST00000554997 REEP2Q9BRK0 252 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 BLZF1Q9H2G9 400 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 CLSTN2Q9H4D0 955 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 POLD4Q9HCU8 107 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 COL4A3BPQ9Y5P4 624 aa11.3□□□□□ -0.6
SYNE2-215ENST00000554997 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 FRMD3A2A2Y4 597 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 SFI1A8K8P3 1242 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 PQBP1O60828 265 aaKnown RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 CAND2O75155 1236 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 SMC2O95347 1197 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 PLS3P13797 630 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 CASP1P29466 404 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 SARSP49591 514 aaKnown RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 CLCN3P51790 818 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 FAAP100Q0VG06 881 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 LAMTOR4Q0VGL1 99 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 MAPK7Q13164 816 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 CAMK4Q16566 473 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 TRIM71Q2Q1W2 868 aaKnown RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 KLHL40Q2TBA0 621 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 TRIM60Q495X7 471 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 NT5DC1Q5TFE4 455 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 UNC13DQ70J99 1090 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 CCDC65Q8IXS2 484 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 MYCT1Q8N699 235 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 GSDMAQ96QA5 445 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 MAP7D2Q96T17 732 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 FAM49AQ9H0Q0 323 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 POLR3FQ9H1D9 316 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 PARVGQ9HBI0 331 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 GPRC5CQ9NQ84 441 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 PANK4Q9NVE7 773 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 LARSQ9P2J5 1176 aaKnown RBP11.29□□□□□ -0.6
SYNE2-215ENST00000554997 ATP11BQ9Y2G3 1177 aa11.29□□□□□ -0.6
SYNE2-215ENST00000554997 SCN10AQ9Y5Y9 1956 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 TNRC18O15417 2968 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 RSPH10B2B2RC85 870 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 KLRC4O43908 158 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 TRAK2O60296 914 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 TBCAO75347 108 aaKnown RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 GPR32O75388 356 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 FAM13AO94988 1023 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 RPN1P04843 607 aaKnown RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 PRR29P0C7W0 189 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 RSPH10BP0C881 870 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 MAPTP10636 758 aaKnown RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 IDEP14735 1019 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 GAP43P17677 238 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 GLRA2P23416 452 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 SMTNP53814 917 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 ASIC1P78348 528 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 RBL2Q08999 1139 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 PSMD2Q13200 908 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 PNOCQ13519 176 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 TFDP1Q14186 410 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 PPP2R5AQ15172 486 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 HERC4Q5GLZ8 1057 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 FAM26DQ5JW98 314 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 RHPN2Q8IUC4 686 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 CCDC155Q8N6L0 562 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 CAGE1Q8TC20 777 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 ASAP3Q8TDY4 903 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 SPIRE2Q8WWL2 714 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 DHX38Q92620 1227 aaKnown RBP11.28□□□□□ -0.6
SYNE2-215ENST00000554997 WNT8BQ93098 351 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 IFT74Q96LB3 600 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 NUP62CLQ9H1M0 184 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 ADAMTS10Q9H324 1103 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 KIAA1468Q9P260 1216 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 SEL1LQ9UBV2 794 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 AKT3Q9Y243 479 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 PCDHA5Q9Y5H7 936 aa11.28□□□□□ -0.6
SYNE2-215ENST00000554997 VTNP04004 478 aa11.27□□□□□ -0.61
SYNE2-215ENST00000554997 CLTBP09497 229 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms