RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RPS6KA5O75582 802 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 XRCC5P13010 732 aaKnown RBP12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GSCP56915 257 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GHRHRQ02643 423 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GFPT1Q06210 699 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-212ENST00000554467 SEPT14Q6ZU15 432 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 HOXC10Q9NYD6 342 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GABBR1Q9UBS5 961 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 PLAGL2Q9UPG8 496 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 KIAA1217Q5T5P2 1943 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GNA14O95837 355 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 SP2Q02086 613 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 SWSAP1Q6NVH7 229 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 PPP4R3CPQ6ZMV5 832 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 NCAPG2Q86XI2 1143 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 GOLGA6L1Q8N7Z2 621 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 FAM133AQ8N9E0 248 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 JAKMIP2Q96AA8 810 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 A0A1W2PQJ5 194 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 SLC16A4O15374 487 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 AKR1B10O60218 316 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 TLR2O60603 784 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 CYLC1P35663 651 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-212ENST00000554467 PEX3P56589 373 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 PDXDC1Q6P996 788 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 NIPA1Q7RTP0 329 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 ZNF526Q8TF50 670 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-212ENST00000554467 MRFAP1Q9Y605 127 aa12.78□□□□□ -0.36
SHMT2-212ENST00000554467 WDR64B1ANS9 1081 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 EPB41P11171 864 aaKnown RBP12.77□□□□□ -0.36
SHMT2-212ENST00000554467 KIF11P52732 1056 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 ZNF131P52739 623 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 BMT2Q1RMZ1 405 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 FIGNQ5HY92 759 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 NOL9Q5SY16 702 aaKnown RBP12.77□□□□□ -0.36
SHMT2-212ENST00000554467 ANO5Q75V66 913 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 FAM186BQ8IYM0 893 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 ZNF408Q9H9D4 720 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 AGPAT3Q9NRZ7 376 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 AJAP1Q9UKB5 411 aaPredicted RBP12.77□□□□□ -0.36
SHMT2-212ENST00000554467 USP20Q9Y2K6 914 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 PPP2R3BQ9Y5P8 575 aa12.77□□□□□ -0.36
SHMT2-212ENST00000554467 DICER1Q9UPY3 1922 aaKnown RBP12.77□□□□□ -0.37
SHMT2-212ENST00000554467 ZNF862O60290 1169 aa12.77□□□□□ -0.37
SHMT2-212ENST00000554467 IPO7O95373 1038 aaKnown RBP12.77□□□□□ -0.37
SHMT2-212ENST00000554467 AFPP02771 609 aaKnown RBP12.77□□□□□ -0.37
SHMT2-212ENST00000554467 MKRN3Q13064 507 aaKnown RBP12.77□□□□□ -0.37
SHMT2-212ENST00000554467 ZC3H3Q8IXZ2 948 aaKnown RBP12.77□□□□□ -0.37
SHMT2-212ENST00000554467 HINFPQ9BQA5 517 aa12.77□□□□□ -0.37
SHMT2-212ENST00000554467 KCNA2P16389 499 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 WDR78Q5VTH9 848 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CYFIP1Q7L576 1253 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 SLC35C1Q96A29 364 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CDCA5Q96FF9 252 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 GBP3Q9H0R5 595 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 MLXIPQ9HAP2 919 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 FAN1Q9Y2M0 1017 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CTAGE9A4FU28 777 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CCDC169A6NNP5 214 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 SRGAP2O75044 1071 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 PGK2P07205 417 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 MARSP56192 900 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 PSMC5P62195 406 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 BEND6Q5SZJ8 279 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 LEKR1Q6ZMV7 388 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 HS2ST1Q7LGA3 356 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CCDC60Q8IWA6 550 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 SUGP1Q8IWZ8 645 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 INPP4AQ96PE3 977 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CBWD1Q9BRT8 395 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 ODF2LQ9ULJ1 636 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 GOLGA8IPA6NC78 632 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 GOLGA8JA6NMD2 632 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 LRRN2O75325 713 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 IVLP07476 585 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 POTEJP0CG39 1038 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 FDX1P10109 184 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 RPL13P26373 211 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 SPA17Q15506 151 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 FRMD5Q7Z6J6 570 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 MOV10L1Q9BXT6 1211 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 IFIH1Q9BYX4 1025 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 CXorf56Q9H5V9 222 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 MAP3K20Q9NYL2 800 aaKnown RBP12.76□□□□□ -0.37
SHMT2-212ENST00000554467 GCNT4Q9P109 453 aa12.76□□□□□ -0.37
SHMT2-212ENST00000554467 EXOC3O60645 756 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 ECM2O94769 699 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-212ENST00000554467 CCDC172P0C7W6 258 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 EXOC3L4Q17RC7 722 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 SFMBT2Q5VUG0 894 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 HGSNATQ68CP4 663 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 CEP170P1Q96L14 293 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 ANKZF1Q9H8Y5 726 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 JPH1Q9HDC5 661 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-212ENST00000554467 CEP72Q9P209 647 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 PCDHA10Q9Y5I2 948 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 CLGNO14967 610 aa12.75□□□□□ -0.37
SHMT2-212ENST00000554467 EIF3DO15371 548 aaKnown RBP eCLIP12.75□□□□□ -0.37
SHMT2-212ENST00000554467 PON1P27169 355 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms