RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 F8VZ95 297 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 TBX3O15119 743 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 TRIM37O94972 964 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 FAM13AO94988 1023 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 EYA4O95677 639 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 HDLBPQ00341 1268 aaKnown RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 ZNF844Q08AG5 666 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 ZNF211Q13398 564 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 DRAP1Q14919 205 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 ARHGAP44Q17R89 818 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 C10orf76Q5T2E6 689 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 SLFN11Q7Z7L1 901 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 SLC35G2Q8TBE7 412 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 UBLCP1Q8WVY7 318 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 PBKQ96KB5 322 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 FAM20AQ96MK3 541 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 FIZ1Q96SL8 496 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 GPR88Q9GZN0 384 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.16□□□□□ -1.16e-7■■■■■ 85.5
LIMA1-213ENST00000552720 BCCIPQ9P287 314 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 CHORDC1Q9UHD1 332 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 DNAJC12Q9UKB3 198 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 PRR12Q9ULL5 1215 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 BRWD3Q6RI45 1802 aa8.16□□□□□ -1.1
LIMA1-213ENST00000552720 MYO1FO00160 1098 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PPP1R37O75864 691 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 ERLIN2O94905 339 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 FGGP02679 453 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 BMP3P12645 472 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 RPL13P26373 211 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 TMOD1P28289 359 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CIITAP33076 1130 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CTNNA1P35221 906 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 MDH1P40925 334 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 FMO5P49326 533 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PRPF4BQ13523 1007 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PTGISQ16647 500 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CHADLQ6NUI6 762 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CCDC174Q6PII3 467 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 TMEM179Q6ZVK1 233 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 C1orf186Q6ZWK4 172 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 MAEAQ7L5Y9 396 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 OTOP1Q7RTM1 612 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 SLC30A5Q8TAD4 765 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 ZNF473Q8WTR7 871 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 HES6Q96HZ4 224 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 HSD17B14Q9BPX1 270 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 EPN3Q9H201 632 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 METTL14Q9HCE5 456 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 ERVK-5Q9HDB9 667 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PPANQ9NQ55 473 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 SEPT11Q9NVA2 429 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 BHMG1C9JSJ3 638 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CES2O00748 559 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 SLC16A3O15427 465 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 FERP16591 822 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 SOX5P35711 763 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PSMC2P35998 433 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 STAT1P42224 750 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 MMP14P50281 582 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 DLG4P78352 724 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 IFI16Q16666 785 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 TBC1D10BQ4KMP7 808 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 LRCH2Q5VUJ6 765 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 RASGEF1CQ8N431 466 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 ACER1Q8TDN7 264 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CCT8L2Q96SF2 557 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 SH2D3AQ9BRG2 576 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 POLR3CQ9BUI4 534 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 THAP2Q9H0W7 228 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 OLFML3Q9NRN5 406 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 PKD2L1Q9P0L9 805 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 CNOT8Q9UFF9 292 aaKnown RBP8.15□□□□□ -1.1
LIMA1-213ENST00000552720 COG5Q9UP83 839 aa8.15□□□□□ -1.1
LIMA1-213ENST00000552720 E7EVH7 732 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 DDX39AO00148 427 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 DDX3YO15523 660 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 PSMD10O75832 226 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 FOSP01100 380 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ARP10275 920 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 DACT2Q5SW24 774 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 UBAP2Q5T6F2 1119 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 PHLDB3Q6NSJ2 640 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 VPS36Q86VN1 386 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 NLRP14Q86W24 1093 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 GMCL1P1Q8NEA9 526 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ZSWIM2Q8NEG5 633 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 MYCBPAPQ8TBZ2 947 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 SLC20A1Q8WUM9 679 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 ZNF622Q969S3 477 aaKnown RBP eCLIP8.14□□□□□ -1.116e-8■□□□□ 9.1
LIMA1-213ENST00000552720 GMCL1Q96IK5 515 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 CALR3Q96L12 384 aaKnown RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 SYT11Q9BT88 431 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 TMOD4Q9NZQ9 345 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 SUCLA2Q9P2R7 463 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 AMFRQ9UKV5 643 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 HMGB1P1B2RPK0 211 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 GCOM1H8Y6P7 765 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-213ENST00000552720 SLC26A4O43511 780 aa8.14□□□□□ -1.11
LIMA1-213ENST00000552720 CPP00450 1065 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms