RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 TBC1D8BQ0IIM8 1120 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 ADAM15Q13444 863 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 PUS10Q3MIT2 529 aaKnown RBP15.02■□□□□ -0
CPSF6-204ENST00000547486 XKR3Q5GH77 459 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 LRRC55Q6ZSA7 311 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 GJD3Q8N144 294 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 CWH43Q9H720 699 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 ELAC1Q9H777 363 aaKnown RBP15.02■□□□□ -0
CPSF6-204ENST00000547486 ATP6V0A4Q9HBG4 840 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 SEPT9Q9UHD8 586 aaPredicted RBP15.02■□□□□ -0
CPSF6-204ENST00000547486 VAV3Q9UKW4 847 aa15.02■□□□□ -0
CPSF6-204ENST00000547486 EVPLQ92817 2033 aa15.02□□□□□ -0.01
CPSF6-204ENST00000547486 LOXHD1Q8IVV2 1947 aa15.02□□□□□ -0.01
CPSF6-204ENST00000547486 RALGAPA2Q2PPJ7 1873 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 NLRC5Q86WI3 1866 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 STK36Q9NRP7 1315 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 CCDC194A0A1B0GVG4 234 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 FAM205CA6NFA0 338 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 DDX11L8A8MPP1 907 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 TBX10O75333 385 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 LARGE1O95461 756 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 CLUL1Q15846 466 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 ME3Q16798 604 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 PPP4R3AQ6IN85 833 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 PIK3AP1Q6ZUJ8 805 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 ANO5Q75V66 913 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 ZNF579Q8NAF0 562 aaKnown RBP15.01□□□□□ -0.01
CPSF6-204ENST00000547486 HAS1Q92839 578 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 CASD1Q96PB1 797 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 C1QTNF1Q9BXJ1 281 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 KCNMB3Q9NPA1 279 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 C11orf16Q9NQ32 467 aa15.01□□□□□ -0.01
CPSF6-204ENST00000547486 WRAP73Q9P2S5 460 aaPredicted RBP15.01□□□□□ -0.01
CPSF6-204ENST00000547486 ORC3Q9UBD5 711 aaPredicted RBP15.01□□□□□ -0.01
CPSF6-204ENST00000547486 PI4K2BG5E9Z4 385 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 MAFO75444 373 aaPredicted RBP15□□□□□ -0.01
CPSF6-204ENST00000547486 SEC24BO95487 1268 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 ZSCAN20P17040 1043 aaPredicted RBP15□□□□□ -0.01
CPSF6-204ENST00000547486 PSMC5P62195 406 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 PPP2R5CQ13362 524 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 SPOUT1Q5T280 376 aaKnown RBP15□□□□□ -0.01
CPSF6-204ENST00000547486 PLA2G4FQ68DD2 849 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 NEK8Q86SG6 692 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 RBM23Q86U06 439 aaKnown RBP15□□□□□ -0.01
CPSF6-204ENST00000547486 ECHDC2Q86YB7 292 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 ZNF710Q8N1W2 664 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 COLGALT1Q8NBJ5 622 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 NLRP7Q8WX94 980 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 FAM20AQ96MK3 541 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 RNF216Q9NWF9 866 aaPredicted RBP15□□□□□ -0.01
CPSF6-204ENST00000547486 CLEC1BQ9P126 229 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 PCDHB12Q9Y5F1 795 aa15□□□□□ -0.01
CPSF6-204ENST00000547486 A0A087WZ62 844 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 CCNT1O60563 726 aaKnown RBP14.99□□□□□ -0.01
CPSF6-204ENST00000547486 FGF18O76093 207 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 NPEPPSP55786 919 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 ERVFC1P60507 584 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 NR5A1Q13285 461 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 ANKRD1Q15327 319 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 CLLU1OSQ5K130 101 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 KSR1Q8IVT5 923 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 TNFRSF25Q93038 417 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 FDXACB1Q9BRP7 624 aaPredicted RBP14.99□□□□□ -0.01
CPSF6-204ENST00000547486 LRFN3Q9BTN0 628 aa14.99□□□□□ -0.01
CPSF6-204ENST00000547486 SUCLA2Q9P2R7 463 aaPredicted RBP14.99□□□□□ -0.01
CPSF6-204ENST00000547486 MYH9P35579 1960 aaKnown RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 A0A0U1RQF3 1178 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 FAM86C2PA6NEL3 165 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 C19orf67A6NJJ6 358 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 PER2O15055 1255 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 MBTPS2O43462 519 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ATF7P17544 494 aaPredicted RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 XBP1P17861 261 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 SSTR3P32745 418 aaPredicted RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 PBX3P40426 434 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 QARSP47897 775 aaKnown RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 NRIP1P48552 1158 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 RBM10P98175 930 aaKnown RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ZP2Q05996 745 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ERICH6BQ5W0A0 696 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ZNF598Q86UK7 904 aaKnown RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 EFHBQ8N7U6 833 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 RNF169Q8NCN4 708 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 MICAL1Q8TDZ2 1067 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 MSLNLQ96KJ4 702 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 SCLT1Q96NL6 688 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 GCOM2Q9BZD3 368 aaPredicted RBP14.98□□□□□ -0.01
CPSF6-204ENST00000547486 TMEM117Q9H0C3 514 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 CYP26B1Q9NR63 512 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 AAASQ9NRG9 546 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ATG2AQ2TAZ0 1938 aa14.98□□□□□ -0.01
CPSF6-204ENST00000547486 ZBTB39O15060 712 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 TBX3O15119 743 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 GLP2RO95838 553 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 GCFC2P16383 781 aaKnown RBP14.97□□□□□ -0.01
CPSF6-204ENST00000547486 DNM2P50570 870 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 NEK4P51957 841 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 UBE3AQ05086 875 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 SPIRE1Q08AE8 756 aa14.97□□□□□ -0.01
CPSF6-204ENST00000547486 SMAD2Q15796 467 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms