RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PARP2Q9UGN5 583 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 CNOT7Q9UIV1 285 aaKnown RBP9.49□□□□□ -0.89
TDP1-204ENST00000545686 SERPINB13Q9UIV8 391 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 GGA1Q9UJY5 639 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 SUGT1Q9Y2Z0 365 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 DAGLAQ9Y4D2 1042 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 SYNGAP1Q96PV0 1343 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 ADAMTSL1Q8N6G6 1762 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 DCDC2CA8MYV0 355 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 SPATA31C1P0DKV0 1188 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 KLRC3Q07444 240 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 PLS1Q14651 629 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 TCEAL1Q15170 157 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 DCAF12L1Q5VU92 463 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 DENND2CQ68D51 928 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 TTBK2Q6IQ55 1244 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 CCDC24Q8N4L8 307 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 GPATCH11Q8N954 259 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 GIMAP7Q8NHV1 300 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 SLC35G2Q8TBE7 412 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 HVCN1Q96D96 273 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 ZNF317Q96PQ6 595 aaPredicted RBP9.49□□□□□ -0.89
TDP1-204ENST00000545686 DPH5Q9H2P9 285 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 EPB41L4BQ9H329 900 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 ATP8A1Q9Y2Q0 1164 aa9.49□□□□□ -0.89
TDP1-204ENST00000545686 RTCBQ9Y3I0 505 aaKnown RBP9.49□□□□□ -0.89
TDP1-204ENST00000545686 ZNFX1Q9P2E3 1918 aaKnown RBP9.49□□□□□ -0.89
TDP1-204ENST00000545686 LOC102724159A0A0B4J2E5 919 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 MIF4GDA9UHW6 222 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 MGRN1O60291 552 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 GGPS1O95749 300 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 PSMC2P35998 433 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 STAT3P40763 770 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 PMS2P54278 862 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 ARHGAP4P98171 946 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 ADCY2Q08462 1091 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 MAPK7Q13164 816 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 PABPC4Q13310 644 aaKnown RBP eCLIP9.48□□□□□ -0.89
TDP1-204ENST00000545686 PWP2Q15269 919 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 C11orf63Q6NUN7 778 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 BTNL9Q6UXG8 535 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 COL23A1Q86Y22 540 aaPredicted RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 RHOT2Q8IXI1 618 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 DCAF4Q8WV16 495 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 TRIM51Q9BSJ1 452 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 POLR3CQ9BUI4 534 aaPredicted RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 HAUS2Q9NVX0 235 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 PFASO15067 1338 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 ZMYM2Q9UBW7 1377 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 ANKRD62A6NC57 917 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 CCT8L1PA6NM43 557 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 F8W031 263 aaPredicted RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 KIF1CO43896 1103 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 CTNND1O60716 968 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 PHF2O75151 1096 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 CAND2O75155 1236 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 EYA4O95677 639 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 AGTP01019 485 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 FOSP01100 380 aaPredicted RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 CHRNA3P32297 505 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 SHMT1P34896 483 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 CASP4P49662 377 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 EIF6P56537 245 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 PTPROQ16827 1216 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 SPRED3Q2MJR0 410 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 QRICH1Q2TAL8 776 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 KIAA1755Q5JYT7 1200 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 FAM186BQ8IYM0 893 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 CNBD1Q8NA66 436 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 CERKQ8TCT0 537 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 ATXN2LQ8WWM7 1075 aaKnown RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 VTI1AQ96AJ9 217 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 RUNDC3BQ96NL0 473 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 GPR101Q96P66 508 aaPredicted RBP9.48□□□□□ -0.89
TDP1-204ENST00000545686 OSGEPQ9NPF4 335 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 PPP1R9AQ9ULJ8 1098 aa9.48□□□□□ -0.89
TDP1-204ENST00000545686 SPDYE3A6NKU9 549 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L15C9J2P7 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L13C9JLJ4 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L11C9JVI0 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L18D6R9N7 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L22D6RA61 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L17D6RBQ6 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L19D6RCP7 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L20D6RJB6 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PODXLO00592 558 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 KIAA0391O15091 583 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 PPIP5K2O43314 1243 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 GCNT3O95395 438 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 MMEP08473 750 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 EZRP15311 586 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 NF2P35240 595 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 SLC16A2P36021 539 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 SREBF1P36956 1147 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 FMO5P49326 533 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PSMC6P62333 389 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 USP17L24Q0WX57 530 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PPP2R5AQ15172 486 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CRY2Q49AN0 593 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 C6orf118Q5T5N4 469 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms