RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 METTL14Q9HCE5 456 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 FAM217BQ9NTX9 383 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 AGTPBP1Q9UPW5 1226 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PODXLO00592 558 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 POLD1P28340 1107 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 PDCD2Q16342 344 aaPredicted RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 TBC1D22AQ8WUA7 517 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 MEGF6O75095 1541 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 ERVV-1B6SEH8 477 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 NVLO15381 856 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 LGR5O75473 907 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 DEUP1Q05D60 604 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 DYNC1I2Q13409 638 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 BARGINQ6ZT62 677 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 GUF1Q8N442 669 aaKnown RBP15.29■□□□□ 0.04
LIMS1-215ENST00000544547 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.29■□□□□ 0.041e-6■■■■■ 61.5
LIMS1-215ENST00000544547 SPZ1Q9BXG8 430 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 BCS1LQ9Y276 419 aa15.29■□□□□ 0.04
LIMS1-215ENST00000544547 ZCCHC18P0CG32 403 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ANKRD20A2Q5SQ80 823 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ANKRD20A1Q5TYW2 823 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 BZW1Q7L1Q6 419 aaKnown RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CPXCR1Q8N123 301 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CCDC110Q8TBZ0 833 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ZNF653Q96CK0 615 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 FNBP1Q96RU3 617 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CENPKQ9BS16 269 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 HEMGNQ9BXL5 484 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 OSBPL7Q9BZF2 842 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 SUDS3Q9H7L9 328 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 RHBDL2Q9NX52 303 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ETAA1Q9NY74 926 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 HAO1Q9UJM8 370 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 E9PMD0 336 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 IFI35P80217 286 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 PTK2Q05397 1052 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 SPARCL1Q14515 664 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 TMCO4Q5TGY1 634 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 GALNT17Q6IS24 598 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 C1orf54Q8WWF1 131 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CCDC127Q96BQ5 260 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 FAM161BQ96MY7 647 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CHORDC1Q9UHD1 332 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 LRRC10BA6NIK2 292 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 TCP10Q12799 353 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ERICH1Q86X53 443 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 FAM186BQ8IYM0 893 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 SYT2Q8N9I0 419 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 FBXO25Q8TCJ0 367 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 MAML1Q92585 1016 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 CELF1Q92879 486 aaKnown RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 HAUS1Q96CS2 278 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 ZCWPW1Q9H0M4 648 aa15.28■□□□□ 0.04
LIMS1-215ENST00000544547 DCP1AQ9NPI6 582 aaPredicted RBP15.28■□□□□ 0.04
LIMS1-215ENST00000544547 SLC9A1P19634 815 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 ITIH3Q06033 890 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 GRAMD1BQ3KR37 738 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 USH1GQ495M9 461 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 ARMC3Q5W041 872 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 PDXDC2PQ6P474 469 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 DPP8Q6V1X1 898 aaPredicted RBP15.27■□□□□ 0.04
LIMS1-215ENST00000544547 ST13P4Q8IZP2 240 aaPredicted RBP15.27■□□□□ 0.04
LIMS1-215ENST00000544547 IQCKQ8N0W5 287 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 GJA3Q9Y6H8 435 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 USP11P51784 963 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 MED15Q96RN5 788 aa15.27■□□□□ 0.04
LIMS1-215ENST00000544547 ATP5HO75947 161 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 HNRNPCP07910 306 aaKnown RBP eCLIP15.27■□□□□ 0.033e-6■■■□□ 16.3
LIMS1-215ENST00000544547 PLA2G4BP0C869 781 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 COASYQ13057 564 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 UBE2SQ16763 222 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 TATDN2Q93075 761 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 ARHGEF10LQ9HCE6 1279 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 ZNF804BA4D1E1 1349 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 GRIN2DO15399 1336 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 DDX39AO00148 427 aaKnown RBP15.27■□□□□ 0.03
LIMS1-215ENST00000544547 PBX1P40424 430 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 ARL1P40616 181 aaPredicted RBP15.27■□□□□ 0.03
LIMS1-215ENST00000544547 GALCP54803 685 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 JAMLQ86YT9 394 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 SPICE1Q8N0Z3 855 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 C3orf20Q8ND61 904 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 GRK7Q8WTQ7 553 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 ERP44Q9BS26 406 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 PLA2G12BQ9BX93 195 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 METTL5Q9NRN9 209 aaKnown RBP15.27■□□□□ 0.03
LIMS1-215ENST00000544547 TMEM260Q9NX78 707 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 ZNF711Q9Y462 761 aa15.27■□□□□ 0.03
LIMS1-215ENST00000544547 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.27■□□□□ 0.03
LIMS1-215ENST00000544547 PEAK1Q9H792 1746 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 A0A1W2PQJ5 194 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 DNAJC3Q13217 504 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 KYNUQ16719 465 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 B4GALNT2Q8NHY0 566 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 C9orf72Q96LT7 481 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 LZTS2Q9BRK4 669 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 TTC7AQ9ULT0 858 aaPredicted RBP15.26■□□□□ 0.03
LIMS1-215ENST00000544547 FAM237AA0A1B0GTK4 181 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 ARHGEF35A5YM69 484 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 MYMKA6NI61 221 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms