RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 PCNX4Q63HM2 1172 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 CIAPIN1Q6FI81 312 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 SYCP3Q8IZU3 236 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 CPXCR1Q8N123 301 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 STK33Q9BYT3 514 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 KIAA1683Q9H0B3 1180 aa19.65■□□□□ 0.74
VIM-209ENST00000544301 RAVER2Q9HCJ3 691 aaKnown RBP19.65■□□□□ 0.74
VIM-209ENST00000544301 TRIM49P0CI25 452 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 TRIM49CP0CI26 452 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 DGKZQ13574 1117 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 IFI16Q16666 785 aaKnown RBP19.64■□□□□ 0.74
VIM-209ENST00000544301 MUM1L1Q5H9M0 696 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 LRRC57Q8N9N7 239 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 SYTL5Q8TDW5 730 aaPredicted RBP19.64■□□□□ 0.74
VIM-209ENST00000544301 TEPSINQ96N21 525 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 SLC38A10Q9HBR0 1119 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 ZHX2Q9Y6X8 837 aa19.64■□□□□ 0.74
VIM-209ENST00000544301 F8VZ95 297 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 EVI5O60447 810 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 TNFRSF8P28908 595 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 SOX5P35711 763 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 NOP2P46087 812 aaKnown RBP19.64■□□□□ 0.73
VIM-209ENST00000544301 LMAN1P49257 510 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 PLS1Q14651 629 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 MAEAQ7L5Y9 396 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 OLIG1Q8TAK6 271 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 DBR1Q9UK59 544 aaKnown RBP19.64■□□□□ 0.73
VIM-209ENST00000544301 DNAJC12Q9UKB3 198 aa19.64■□□□□ 0.73
VIM-209ENST00000544301 K7ENM7 598 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 CES2O00748 559 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 EXOC3O60645 756 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 RNF40O75150 1001 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 H2AFZP0C0S5 128 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 MYBPC2Q14324 1141 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 DRAP1Q14919 205 aaPredicted RBP19.63■□□□□ 0.73
VIM-209ENST00000544301 RPS6KA1Q15418 735 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 H2AFVQ71UI9 128 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 SND1Q7KZF4 910 aaKnown RBP eCLIP19.63■□□□□ 0.732e-10■■□□□ 12.8
VIM-209ENST00000544301 TAF4BQ92750 862 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 INTS2Q9H0H0 1204 aaKnown RBP19.63■□□□□ 0.73
VIM-209ENST00000544301 HOMER2Q9NSB8 354 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 INTUQ9ULD6 942 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 AGPSO00116 658 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 KIF4AO95239 1232 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 GGCXP38435 758 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 BFSP1Q12934 665 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 MTMR1Q13613 665 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 TPCN2Q8NHX9 752 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 SLC30A5Q8TAD4 765 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 U2AF1L4Q8WU68 220 aaKnown RBP19.63■□□□□ 0.73
VIM-209ENST00000544301 PKNOX2Q96KN3 472 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 GPR88Q9GZN0 384 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 SAMM50Q9Y512 469 aa19.63■□□□□ 0.73
VIM-209ENST00000544301 A0A0A6YYK5 440 aaPredicted RBP19.62■□□□□ 0.73
VIM-209ENST00000544301 MAPTP10636 758 aaKnown RBP19.62■□□□□ 0.73
VIM-209ENST00000544301 QARSP47897 775 aaKnown RBP19.62■□□□□ 0.73
VIM-209ENST00000544301 RARRES1P49788 294 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 EPHB4P54760 987 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 MYL7Q01449 175 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 SPP2Q13103 211 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 LNX1Q8TBB1 728 aaPredicted RBP19.62■□□□□ 0.73
VIM-209ENST00000544301 TAAR1Q96RJ0 339 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 GOLPH3Q9H4A6 298 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 LARSQ9P2J5 1176 aaKnown RBP19.62■□□□□ 0.73
VIM-209ENST00000544301 FER1L6Q2WGJ9 1857 aa19.62■□□□□ 0.73
VIM-209ENST00000544301 KCNK3O14649 394 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 LYPLA2O95372 231 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 EGFRP00533 1210 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 USP38Q8NB14 1042 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 RDH13Q8NBN7 331 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 MAP3K20Q9NYL2 800 aaKnown RBP19.61■□□□□ 0.73
VIM-209ENST00000544301 APEX2Q9UBZ4 518 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 GLI1P08151 1106 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 EIF2AK2P19525 551 aaKnown RBP19.61■□□□□ 0.73
VIM-209ENST00000544301 RNASE9P60153 205 aaKnown RBP19.61■□□□□ 0.73
VIM-209ENST00000544301 RPS6P62753 249 aaKnown RBP19.61■□□□□ 0.73
VIM-209ENST00000544301 ALCAMQ13740 583 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 EMBQ6PCB8 327 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 RIN2Q8WYP3 895 aaPredicted RBP19.61■□□□□ 0.73
VIM-209ENST00000544301 TMEM206Q9H813 350 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 FAM204AQ9H8W3 233 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 GDF3Q9NR23 364 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 TBC1D22BQ9NU19 505 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 PPP1R9AQ9ULJ8 1098 aa19.61■□□□□ 0.73
VIM-209ENST00000544301 PLS3P13797 630 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 ZNF280AP59817 542 aaPredicted RBP19.6■□□□□ 0.73
VIM-209ENST00000544301 PGM5Q15124 567 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 SLFN11Q7Z7L1 901 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 IFT20Q8IY31 132 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 TMEM174Q8WUU8 243 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 CAVIN3Q969G5 261 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 PBKQ96KB5 322 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 ACCSQ96QU6 501 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 KRT12Q99456 494 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 SYT11Q9BT88 431 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 PCIF1Q9H4Z3 704 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 TMEM59LQ9UK28 342 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 GOLGA6BA6NDN3 693 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 TISP43B9A030 160 aa19.6■□□□□ 0.73
VIM-209ENST00000544301 CTNND1O60716 968 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms