RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DDX12P	Q92771	950 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	KIFAP3	Q92845	792 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZNF668	Q96K58	619 aa	Predicted RBP	11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	IFT74	Q96LB3	600 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	DRC1	Q96MC2	740 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	TIGD1	Q96MW7	591 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	CEP89	Q96ST8	783 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	TIPIN	Q9BVW5	301 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	XPNPEP1	Q9NQW7	623 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	KBTBD4	Q9NVX7	518 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	PRKAG2	Q9UGJ0	569 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	IGKV6-21	A0A0C4DH24	114 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CCDC169	A6NNP5	214 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	ASAP2	O43150	1006 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	GTPBP6	O43824	516 aa	Predicted RBP	11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	EVI5	O60447	810 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CD4	P01730	458 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	RPLP2	P05387	115 aa	Known RBP	11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CTSH	P09668	335 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	SRGAP2C	P0DJJ0	459 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CASP1	P29466	404 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	FAAP100	Q0VG06	881 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	MKRN4P	Q13434	485 aa	Predicted RBP	11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	GIT2	Q14161	759 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	TFDP1	Q14186	410 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	MXD4	Q14582	209 aa	Predicted RBP	11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CAMK4	Q16566	473 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CCDC65	Q8IXS2	484 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	C7orf61	Q8IZ16	206 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	MYCT1	Q8N699	235 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	NLRP7	Q8WX94	980 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	CCDC47	Q96A33	483 aa	Known RBP	11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	NLRP4	Q96MN2	994 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	C7orf25	Q9BPX7	421 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	REEP2	Q9BRK0	252 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	PPP1R12C	Q9BZL4	782 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	PDLIM7	Q9NR12	457 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	COL4A3BP	Q9Y5P4	624 aa		11.25	□□□□□ -0.61
CPSF7-221	ENST00000543545	LRRIQ4	A6NIV6	560 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	RSPH10B2	B2RC85	870 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	SMC2	O95347	1197 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	RSPH10B	P0C881	870 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	ARL2	P36404	184 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	SMTN	P53814	917 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	PEX3	P56589	373 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	NLRP11	P59045	1033 aa	Known RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	MRPS6	P82932	125 aa	Known RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	CDC42EP1	Q00587	391 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	LAMTOR4	Q0VGL1	99 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	DMP1	Q13316	513 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	CUL4B	Q13620	913 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	POSTN	Q15063	836 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	PPP2R5A	Q15172	486 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	HERC4	Q5GLZ8	1057 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	KSR1	Q8IVT5	923 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	DEPTOR	Q8TB45	409 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	CAGE1	Q8TC20	777 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	GPT2	Q8TD30	523 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	ASAP3	Q8TDY4	903 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	DHX38	Q92620	1227 aa	Known RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	WNT8B	Q93098	351 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	CTAGE1	Q96RT6	745 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRIM9	Q9C026	710 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	HIPK3	Q9H422	1215 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	PARVG	Q9HBI0	331 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	PANK4	Q9NVE7	773 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	LARS	Q9P2J5	1176 aa	Known RBP	11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	KCNG1	Q9UIX4	513 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	ODF2L	Q9ULJ1	636 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	CDY2A	Q9Y6F7	541 aa		11.24	□□□□□ -0.61
CPSF7-221	ENST00000543545	MYL1	P05976	194 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	PRR29	P0C7W0	189 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	CKB	P12277	381 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	PLS3	P13797	630 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	RAG1	P15918	1043 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	SELP	P16109	830 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	GAP43	P17677	238 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	GLRA2	P23416	452 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	CCL23	P55773	120 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	PNOC	Q13519	176 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	NFKBIB	Q15653	356 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	KIZ	Q2M2Z5	673 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	ODR4	Q5SWX8	454 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZNF618	Q5T7W0	954 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	SH3RF1	Q7Z6J0	888 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	ZNF710	Q8N1W2	664 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	LINC01465	Q8N7H1	131 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	RNF149	Q8NC42	400 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	DNAJC19	Q96DA6	116 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	NOC4L	Q9BVI4	516 aa	Known RBP	11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	CELF4	Q9BZC1	486 aa	Known RBP	11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	GCOM2	Q9BZD3	368 aa	Predicted RBP	11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	NUP62CL	Q9H1M0	184 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	EXOC1	Q9NV70	894 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	TBC1D7	Q9P0N9	293 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRPV2	Q9Y5S1	764 aa		11.23	□□□□□ -0.61
CPSF7-221	ENST00000543545		A0A087WZ62	844 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	TRAK2	O60296	914 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	CAND2	O75155	1236 aa		11.22	□□□□□ -0.61
CPSF7-221	ENST00000543545	RPN1	P04843	607 aa	Known RBP	11.22	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms