RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	DUSP8	Q13202	625 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	NFYC	Q13952	458 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	TKFC	Q3LXA3	575 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488		Q6ZSN1	163 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	SHCBP1	Q8NEM2	672 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	EXTL1	Q92935	676 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	RPL10L	Q96L21	214 aa	Known RBP	5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	ELF4	Q99607	663 aa	Predicted RBP	5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	ACSS2	Q9NR19	701 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	TOMM22	Q9NS69	142 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	FANCL	Q9NW38	375 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	SAE1	Q9UBE0	346 aa	Predicted RBP	5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	B4GALT6	Q9UBX8	382 aa		5.77	□□□□□ -1.49
PRKDC-210	ENST00000541488	FNTB	P49356	437 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	GRM7	Q14831	915 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	TTC38	Q5R3I4	469 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	ESRP1	Q6NXG1	681 aa	Known RBP	5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	POLN	Q7Z5Q5	900 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	NPM2	Q86SE8	214 aa	Known RBP	5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	OR5AN1	Q8NGI8	311 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	RTF1	Q92541	710 aa	Known RBP	5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	MAML3	Q96JK9	1138 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	AGO3	Q9H9G7	860 aa	Known RBP	5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	OXSM	Q9NWU1	459 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	PLA2G3	Q9NZ20	509 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	DNAI1	Q9UI46	699 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	DENND2A	Q9ULE3	1009 aa		5.76	□□□□□ -1.49
PRKDC-210	ENST00000541488	ATP2A2	P16615	1042 aa	Known RBP	5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	DGCR2	P98153	550 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	HGFAC	Q04756	655 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	SAFB2	Q14151	953 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	TCEA2	Q15560	299 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	KLHDC10	Q6PID8	442 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	SGMS1	Q86VZ5	419 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	HOMER1	Q86YM7	354 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	DHX37	Q8IY37	1157 aa	Known RBP	5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	E2F7	Q96AV8	911 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	CHFR	Q96EP1	664 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	CSRNP2	Q9H175	543 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	SEMA4A	Q9H3S1	761 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	POFUT1	Q9H488	388 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	TLR9	Q9NR96	1032 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	THG1L	Q9NWX6	298 aa	Known RBP	5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	ZKSCAN5	Q9Y2L8	839 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	MRPL42	Q9Y6G3	142 aa	Known RBP	5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	PCSK5	Q92824	1860 aa		5.75	□□□□□ -1.49
PRKDC-210	ENST00000541488	GOLGA8B	A8MQT2	603 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	SLC26A4	O43511	780 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	CYP17A1	P05093	508 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	HIBADH	P31937	336 aa	Known RBP	5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	RPS19	P39019	145 aa	Known RBP	5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	RIN1	Q13671	783 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	MYBPC3	Q14896	1274 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	DGKD	Q16760	1214 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	CREB3L3	Q68CJ9	461 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	D2HGDH	Q8N465	521 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	ANKRD53	Q8N9V6	530 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	CHTF18	Q8WVB6	975 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	APPBP2	Q92624	585 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	GCDH	Q92947	438 aa	Predicted RBP	5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	C16orf92	Q96LL3	132 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	IFT57	Q9NWB7	429 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	MAGEC2	Q9UBF1	373 aa	Predicted RBP	5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	TESMIN	Q9Y4I5	508 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	SLC30A1	Q9Y6M5	507 aa		5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488	WDR33	Q9C0J8	1336 aa	Known RBP	5.74	□□□□□ -1.49
PRKDC-210	ENST00000541488		A0A1W2PRX2	142 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	LCHN	A4D1U4	455 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	C2orf78	A6NCI8	922 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	NPIPB8	E9PQR5	432 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	GAS7	O60861	476 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	BPIFB4	P59827	614 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	NANOS3	P60323	173 aa	Known RBP	5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	PURA	Q00577	322 aa	Known RBP	5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	UNQ6494/PRO21346	Q6UXR6	183 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	C1orf210	Q8IVY1	113 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	C7orf31	Q8N865	590 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	FAM89A	Q96GI7	184 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	DYDC2	Q96IM9	177 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	MYL10	Q9BUA6	226 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	NCDN	Q9UBB6	729 aa		5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	CTDP1	Q9Y5B0	961 aa	Predicted RBP	5.73	□□□□□ -1.49
PRKDC-210	ENST00000541488	CAPN14	A8MX76	684 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	PLSCR1	O15162	318 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	H2AFY	O75367	372 aa	Known RBP	5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	RFPL3	O75679	317 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	ADCY2	Q08462	1091 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	MAMDC4	Q6UXC1	1216 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	RNF207	Q6ZRF8	634 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	LRRTM3	Q86VH5	581 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	JAZF1	Q86VZ6	243 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	RPGR	Q92834	1020 aa	Known RBP	5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	EDA	Q92838	391 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	GPR101	Q96P66	508 aa	Predicted RBP	5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	MS4A5	Q9H3V2	200 aa		5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	POLR3B	Q9NW08	1133 aa	Predicted RBP	5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	HECA	Q9UBI9	543 aa	Predicted RBP	5.72	□□□□□ -1.49
PRKDC-210	ENST00000541488	SPO11	Q9Y5K1	396 aa		5.72	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms