RNA–Protein interactions for RNA: ENST00000535180.5

VAMP1-204, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 3 BASIC

Gene VAMP1, Length 747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-204ENST00000535180 LHX6Q9UPM6 363 aa12.35□□□□□ -0.43
VAMP1-204ENST00000535180 MTF2Q9Y483 593 aaPredicted RBP12.35□□□□□ -0.43
VAMP1-204ENST00000535180 WDFY3Q8IZQ1 3526 aa12.35□□□□□ -0.43
VAMP1-204ENST00000535180 FRMPD4Q14CM0 1322 aa12.35□□□□□ -0.43
VAMP1-204ENST00000535180 SPAG17Q6Q759 2223 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 NAV2Q8IVL1 2488 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 FAM170BA6NMN3 283 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 NT5C1B-RDH14C9J2C7 533 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 ANHXE9PGG2 379 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 GCOM1H8Y6P7 765 aaPredicted RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 TM4SF5O14894 197 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 FOXD2O60548 495 aaPredicted RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 POLR2MP0CAP2 368 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 METAP2P50579 478 aaKnown RBP eCLIP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CLCN4P51793 760 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 RING1Q06587 406 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 SNW1Q13573 536 aaKnown RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 WTAPQ15007 396 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 LPAL2Q16609 132 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CYP26C1Q6V0L0 522 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 DDX53Q86TM3 631 aaKnown RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 DGKHQ86XP1 1220 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CELF5Q8N6W0 485 aaKnown RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 PNMA1Q8ND90 353 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CMASQ8NFW8 434 aaPredicted RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 TMEM40Q8WWA1 233 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 BBXQ8WY36 941 aaPredicted RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 TNPO1Q92973 898 aaKnown RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 RHOBTB2Q9BYZ6 727 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 LRRCC1Q9C099 1032 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CDHR5Q9HBB8 845 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 PRMT8Q9NR22 394 aaPredicted RBP12.34□□□□□ -0.43
VAMP1-204ENST00000535180 GINS2Q9Y248 185 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 CLUHO75153 1309 aa12.34□□□□□ -0.43
VAMP1-204ENST00000535180 ADAMTS20P59510 1910 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 DMXL2Q8TDJ6 3036 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 TMEM8BA6NDV4 472 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 SRRM3A6NNA2 597 aaPredicted RBP12.33□□□□□ -0.44
VAMP1-204ENST00000535180 TAF4O00268 1085 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 PPP1R11O60927 126 aaPredicted RBP12.33□□□□□ -0.44
VAMP1-204ENST00000535180 LAMP2P13473 410 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 BCAR1P56945 870 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 PRKCQQ04759 706 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 HTR4Q13639 388 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 DSC3Q14574 896 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 UBXN2BQ14CS0 331 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 ALX1Q15699 326 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 CLDN23Q96B33 292 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.33□□□□□ -0.44
VAMP1-204ENST00000535180 ITPR1Q14643 2758 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 AKAP13Q12802 2813 aa12.33□□□□□ -0.44
VAMP1-204ENST00000535180 SDK1Q7Z5N4 2213 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 CCDC195A0A1B0GUA6 201 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 SMARCA5O60264 1052 aaPredicted RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 ZIC2O95409 532 aaPredicted RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 PARP1P09874 1014 aaKnown RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 KLRC2P26717 231 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 LIMK1P53667 647 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 GPC5P78333 572 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 MLF2Q15773 248 aaPredicted RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 CLLU1OSQ5K130 101 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 ZBTB41Q5SVQ8 909 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 VPS53Q5VIR6 699 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 RSPO2Q6UXX9 243 aaPredicted RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 TRAPPC12Q8WVT3 735 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 MAP4K1Q92918 833 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 KLHL5Q96PQ7 755 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 MYL10Q9BUA6 226 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 NUMBLQ9Y6R0 609 aa12.32□□□□□ -0.44
VAMP1-204ENST00000535180 MYH9P35579 1960 aaKnown RBP12.32□□□□□ -0.44
VAMP1-204ENST00000535180 TRIM6-TRIM34B2RNG4 842 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 ZBTB5O15062 677 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 ATP9AO75110 1047 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 RPS9P46781 194 aaKnown RBP12.31□□□□□ -0.44
VAMP1-204ENST00000535180 NRLP54845 237 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 PLCB4Q15147 1175 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 SLC44A4Q53GD3 710 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 TSHZ3Q63HK5 1081 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 MTHFD1LQ6UB35 978 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 NLRX1Q86UT6 975 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 TMEM173Q86WV6 379 aaPredicted RBP12.31□□□□□ -0.44
VAMP1-204ENST00000535180 MTMR8Q96EF0 704 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 GPATCH3Q96I76 525 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 IGSF21Q96ID5 467 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 ZKSCAN3Q9BRR0 538 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 EMILIN2Q9BXX0 1053 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 MRPL9Q9BYD2 267 aaKnown RBP12.31□□□□□ -0.44
VAMP1-204ENST00000535180 LTB4R2Q9NPC1 389 aa12.31□□□□□ -0.44
VAMP1-204ENST00000535180 IGSF10Q6WRI0 2623 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 CARNS1A5YM72 827 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 NCAM2O15394 837 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 FGAP02671 866 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 PCP11498 1178 aaKnown RBP12.3□□□□□ -0.44
VAMP1-204ENST00000535180 TDGF1P13385 188 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 KCNA2P16389 499 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 PCNX4Q63HM2 1172 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 PRR23BQ6ZRT6 265 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 MFSD6Q6ZSS7 791 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 FAM228AQ86W67 206 aa12.3□□□□□ -0.44
VAMP1-204ENST00000535180 ECHDC2Q86YB7 292 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms