RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PLCB3Q01970 1234 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 TOB2Q14106 344 aaPredicted RBP12.81□□□□□ -0.36
VPS28-214ENST00000531032 TARBP2Q15633 366 aaKnown RBP12.81□□□□□ -0.36
VPS28-214ENST00000531032 DUSP6Q16828 381 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 Q4G0T1 1027 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 LRCH2Q5VUJ6 765 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 RUFY3Q7L099 469 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 RNF135Q8IUD6 432 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 TRIM22Q8IYM9 498 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 THNSL1Q8IYQ7 743 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 RDM1Q8NG50 284 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 MICAL1Q8TDZ2 1067 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 TBCKQ8TEA7 893 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 CASD1Q96PB1 797 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 TEKT3Q9BXF9 490 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 C22orf23Q9BZE7 217 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 UNC45AQ9H3U1 944 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 TLE6Q9H808 572 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 ZSWIM6Q9HCJ5 1215 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 MUTYHQ9UIF7 546 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 CYP3A7-CYP3A51PA0A087WV96 503 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 CHMP2AO43633 222 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 PSMD10O75832 226 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 DARSP14868 501 aaKnown RBP12.8□□□□□ -0.36
VPS28-214ENST00000531032 CYP3A7P24462 503 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 ERVFC1P60507 584 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 TBC1D8BQ0IIM8 1120 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 B3GNT9Q6UX72 402 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 LRRC55Q6ZSA7 311 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 ECHDC2Q86YB7 292 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 FAM177A1Q8N128 213 aaPredicted RBP12.8□□□□□ -0.36
VPS28-214ENST00000531032 LRRC43Q8N309 656 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 DAGLBQ8NCG7 672 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 VN1R2Q8NFZ6 395 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 MRPS27Q92552 414 aaKnown RBP12.8□□□□□ -0.36
VPS28-214ENST00000531032 GJA10Q969M2 543 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 PCDHA4Q9UN74 947 aa12.8□□□□□ -0.36
VPS28-214ENST00000531032 USP15Q9Y4E8 981 aaPredicted RBP12.8□□□□□ -0.36
VPS28-214ENST00000531032 A0A0U1RQF3 1178 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 LOC730098B7Z3J9 87 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 PER2O15055 1255 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 DEXIO95424 95 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 TDP2O95551 362 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 ZSCAN20P17040 1043 aaPredicted RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 PPM1AP35813 382 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 RBM10P98175 930 aaKnown RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 SSRP1Q08945 709 aaKnown RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 KCNC3Q14003 757 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 CBX2Q14781 532 aaPredicted RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 NPY5RQ15761 445 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 KCNT2Q6UVM3 1135 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 MOXD1Q6UVY6 613 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 TMEM184AQ6ZMB5 413 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 HFE2Q6ZVN8 426 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 ZNF598Q86UK7 904 aaKnown RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 ETNPPLQ8TBG4 499 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 SUSD6Q92537 303 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 ZNF274Q96GC6 653 aaPredicted RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 MBOAT7Q96N66 472 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 CEP89Q96ST8 783 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 NIFKQ9BYG3 293 aaKnown RBP12.79□□□□□ -0.36
VPS28-214ENST00000531032 KCNH6Q9H252 994 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 ZNF318Q5VUA4 2279 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 TECTAO75443 2155 aa12.79□□□□□ -0.36
VPS28-214ENST00000531032 IGKV6-21A0A0C4DH24 114 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 CPLX1O14810 134 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 STBD1O95210 358 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 EOMESO95936 686 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 ATF7P17544 494 aaPredicted RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 DRP2Q13474 957 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 XKR3Q5GH77 459 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 CLLU1OSQ5K130 101 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 PLPP4Q5VZY2 271 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 GALNT17Q6IS24 598 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 MIER3Q7Z3K6 550 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 ABI1Q8IZP0 508 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 BLIDQ8IZY5 108 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 NLRP7Q8WX94 980 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 EDAQ92838 391 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 ZNF668Q96K58 619 aaPredicted RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 ZNF558Q96NG5 402 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 SCLT1Q96NL6 688 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 TCF25Q9BQ70 676 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 PHF7Q9BWX1 381 aaPredicted RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 TM6SF1Q9BZW5 370 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 NGRNQ9NPE2 291 aaKnown RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 DACT1Q9NYF0 836 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 SEPT9Q9UHD8 586 aaPredicted RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 PUF60Q9UHX1 559 aaKnown RBP12.78□□□□□ -0.36
VPS28-214ENST00000531032 CYP46A1Q9Y6A2 500 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 PIEZO1Q92508 2521 aa12.78□□□□□ -0.36
VPS28-214ENST00000531032 WDFY4Q6ZS81 3184 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 TMEM150BA6NC51 233 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 SRGAP2BP0DMP2 458 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 FGFR4P22455 802 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 PBX3P40426 434 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 CDC42EP1Q00587 391 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 MTERF2Q49AM1 385 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 TRAIPQ9BWF2 469 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 GCOM2Q9BZD3 368 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms