RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 EIF5P55010 431 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NPEPPSP55786 919 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITGA1P56199 1179 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SOX10P56693 466 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NRG3P56975 720 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF280AP59817 542 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF445P59923 1031 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SATB1Q01826 763 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 OCRLQ01968 901 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADCY1Q08828 1119 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SSRP1Q08945 709 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCRN1Q12765 414 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAPQ12884 760 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PAK1Q13153 545 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PABPC4Q13310 644 aaKnown RBP eCLIP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMAD4Q13485 552 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PIN1Q13526 163 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GTF2H3Q13889 308 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GBX1Q14549 363 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRM7Q14831 915 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRT72Q14CN4 511 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SART3Q15020 963 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MLC1Q15049 377 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRRC41Q15345 812 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DHCR24Q15392 516 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PUM3Q15397 648 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF174Q15697 407 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRY1Q16526 586 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGAP44Q17R89 818 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DPY19L1Q2PZI1 675 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRAMD1BQ3KR37 738 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TKFCQ3LXA3 575 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MINDY4Q4G0A6 757 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TIGD2Q4W5G0 525 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP39Q53GS9 565 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALFQ53S48 1182 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRR16Q569H4 304 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRB2Q5IJ48 1285 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRP12Q5JTH9 1297 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MIIPQ5JXC2 388 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DACT2Q5SW24 774 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 HYIQ5T013 277 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM83BQ5T0W9 1011 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FKBP15Q5T1M5 1219 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM63BQ5T3F8 832 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 C10orf62Q5T681 223 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM102BQ5T8I3 360 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SYDE2Q5VT97 1194 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 LAIR1Q6GTX8 287 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CXorf57Q6NSI4 855 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIAA1211LQ6NV74 962 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNV1Q6PIU1 500 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRIP3Q6Q6R5 217 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 VHLLQ6RSH7 139 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRTC3Q6UUV7 619 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 UNC5AQ6ZN44 842 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 RNF207Q6ZRF8 634 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 Q6ZUG5 572 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOGARAM2Q6ZUX3 1019 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP30Q70CQ3 517 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMC3Q7Z5M5 1100 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANKRD23Q86SG2 305 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTDHQ86UE4 582 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GGNQ86UU5 652 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZBTB46Q86UZ6 589 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TAX1BP1Q86VP1 789 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MIB1Q86YT6 1006 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 WFDC3Q8IUB2 231 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CILP2Q8IUL8 1156 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SYT12Q8IV01 421 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCUBE1Q8IWY4 988 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZFPM1Q8IX07 1006 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM178BQ8IXR5 827 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PALM2Q8IXS6 379 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPIL6Q8IXY8 311 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 RAVER1Q8IY67 606 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEFF1Q8IYR6 380 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPICE1Q8N0Z3 855 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CPXCR1Q8N123 301 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPM1KQ8N3J5 372 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SDR16C5Q8N3Y7 309 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 D2HGDHQ8N465 521 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGEF39Q8N4T4 335 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 AFAP1L2Q8N4X5 818 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAGEB6Q8N7X4 407 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ENAHQ8N8S7 591 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC89Q8N998 374 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANKRD42Q8N9B4 389 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZBTB38Q8NAP3 1195 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GLB1L3Q8NCI6 653 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 C1orf131Q8NDD1 294 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PJA1Q8NG27 643 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 WDR66Q8TBY9 1149 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 IGDCC4Q8TDY8 1250 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FRS2Q8WU20 508 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DCAF4Q8WV16 495 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEU4Q8WWR8 484 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMG7Q92540 1137 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 BRF1Q92994 677 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CAVIN3Q969G5 261 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms