RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ZSCAN20P17040 1043 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 ID4P47928 161 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 NLRP11P59045 1033 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 MICU3Q86XE3 530 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 HELQQ8TDG4 1101 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 AUTS2Q8WXX7 1259 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 TMEM87BQ96K49 555 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 MTA3Q9BTC8 594 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 DBR1Q9UK59 544 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 FAM186AA6NE01 2351 aa23.09■■□□□ 1.29
SQSTM1-215ENST00000514093 DCHS1Q96JQ0 3298 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 FAM86B1E9PN63 330 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 PI15O43692 258 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 FAM86B2P0C5J1 330 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 CLCN5P51795 746 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 MCTP2Q6DN12 878 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 PLA2G4DQ86XP0 818 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 ZDHHC14Q8IZN3 488 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 AKT3Q9Y243 479 aa23.08■■□□□ 1.29
SQSTM1-215ENST00000514093 FOSP01100 380 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 EPCAMP16422 314 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 FGFR4P22455 802 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 SREBF1P36956 1147 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 LIFRP42702 1097 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 ADCY7P51828 1080 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 BCAR1P56945 870 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 ATAT1Q5SQI0 421 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 CWF19L1Q69YN2 538 aaKnown RBP23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 BBXQ8WY36 941 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 ADAMTS10Q9H324 1103 aa23.07■■□□□ 1.28
SQSTM1-215ENST00000514093 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 SMCO2A6NFE2 343 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 KIAA1841Q6NSI8 718 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 EFCAB12Q6NXP0 572 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 ERMP1Q7Z2K6 904 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 VPS52Q8N1B4 723 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 LRRC71Q8N4P6 559 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 TMEM87AQ8NBN3 555 aa23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 MAFBQ9Y5Q3 323 aaPredicted RBP23.06■■□□□ 1.28
SQSTM1-215ENST00000514093 EIF4BP23588 611 aaKnown RBP23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 ALDH7A1P49419 539 aaKnown RBP23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 JAKMIP3Q5VZ66 844 aa23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 TMC5Q6UXY8 1006 aa23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 TMEM173Q86WV6 379 aaPredicted RBP23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 PLCD3Q8N3E9 789 aa23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 TMEM169Q96HH4 297 aa23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 CNTNAP5Q8WYK1 1306 aa23.05■■□□□ 1.28
SQSTM1-215ENST00000514093 IPO5O00410 1097 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 EOMESO95936 686 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 NPR3P17342 541 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 NIPA1Q7RTP0 329 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 ZNF598Q86UK7 904 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 MAP7D2Q96T17 732 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 ZNF577Q9BSK1 485 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 CYP26B1Q9NR63 512 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 GABBR1Q9UBS5 961 aa23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 V9GY48 417 aaPredicted RBP23.04■■□□□ 1.28
SQSTM1-215ENST00000514093 IGLV3-22A0A075B6J6 115 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 A0A0U1RQF3 1178 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 CSDE1O75534 798 aaKnown RBP23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 CLK2P49760 499 aaKnown RBP23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 BMS1Q14692 1282 aaKnown RBP23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 LONRF3Q496Y0 759 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 SLC22A17Q8WUG5 538 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 ZBP1Q9H171 429 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 DZANK1Q9NVP4 752 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 USTQ9Y2C2 406 aa23.03■■□□□ 1.28
SQSTM1-215ENST00000514093 SLC27A2O14975 620 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 MAGEB2O15479 319 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 ZC3H11AO75152 810 aaKnown RBP eCLIP23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 AOC1P19801 751 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 AP3B2Q13367 1082 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 ANGPT1Q15389 498 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 PPP1R18Q6NYC8 613 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 LINC01465Q8N7H1 131 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 CEP131Q9UPN4 1083 aa23.02■■□□□ 1.28
SQSTM1-215ENST00000514093 ADAMTS3O15072 1205 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 PSAPP07602 524 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 TMOD1P28289 359 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 FUT2Q10981 343 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 ZNF746Q6NUN9 644 aaPredicted RBP23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 SYNE3Q6ZMZ3 975 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 CABP7Q86V35 215 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 SGMS1Q86VZ5 419 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 CCDC105Q8IYK2 499 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 BCL7CQ8WUZ0 217 aaPredicted RBP23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 SCLT1Q96NL6 688 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 SAMM50Q9Y512 469 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 PCDHA10Q9Y5I2 948 aa23.01■■□□□ 1.27
SQSTM1-215ENST00000514093 DARSP14868 501 aaKnown RBP23■■□□□ 1.27
SQSTM1-215ENST00000514093 GPC3P51654 580 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 TDGQ13569 410 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 LPPQ93052 612 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 ACSF2Q96CM8 615 aaPredicted RBP23■■□□□ 1.27
SQSTM1-215ENST00000514093 MRPL9Q9BYD2 267 aaKnown RBP23■■□□□ 1.27
SQSTM1-215ENST00000514093 LSG1Q9H089 658 aaKnown RBP23■■□□□ 1.27
SQSTM1-215ENST00000514093 TBC1D22BQ9NU19 505 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 BARHL2Q9NY43 387 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 TCEAL9Q9UHQ7 104 aa23■■□□□ 1.27
SQSTM1-215ENST00000514093 FBXL21Q9UKT6 434 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms