RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ARSHQ5FYA8 562 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 CEP57L1Q8IYX8 460 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 PSPC1Q8WXF1 523 aaKnown RBP32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 PPP1R16BQ96T49 567 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 TNMDQ9H2S6 317 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 PCDH10Q9P2E7 1040 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 PRKAG2Q9UGJ0 569 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 LIG1P18858 919 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 GUCY2CP25092 1073 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 MRPS6P82932 125 aaKnown RBP32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 LONRF3Q496Y0 759 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 ZNF618Q5T7W0 954 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 IER5Q5VY09 327 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 FMR1NBQ8N0W7 255 aaPredicted RBP32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 STAMQ92783 540 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 KBTBD4Q9NVX7 518 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 USP25Q9UHP3 1055 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 PDE4DIPQ5VU43 2346 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 SCN5AQ14524 2016 aa32.86■■■□□ 2.85
LIMCH1-211ENST00000509638 NPHP3-ACAD11A0A0J9YXS1 232 aa32.85■■■□□ 2.85
LIMCH1-211ENST00000509638 SLFN14P0C7P3 912 aa32.85■■■□□ 2.85
LIMCH1-211ENST00000509638 RHPN2Q8IUC4 686 aa32.85■■■□□ 2.85
LIMCH1-211ENST00000509638 NME8Q8N427 588 aa32.85■■■□□ 2.85
LIMCH1-211ENST00000509638 HIP1RO75146 1068 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 ZNF202O95125 648 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 KRT18P05783 430 aaKnown RBP32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 CYP2C18P33260 490 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 CACNB1Q02641 598 aaPredicted RBP32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 LRRC8DQ7L1W4 858 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 ENGASEQ8NFI3 743 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 PRPF31Q8WWY3 499 aaKnown RBP32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 REEP2Q9BRK0 252 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 TIPINQ9BVW5 301 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 WNT8AQ9H1J5 351 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 POLD4Q9HCU8 107 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 LMBRD1Q9NUN5 540 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 COL4A3BPQ9Y5P4 624 aa32.84■■■□□ 2.85
LIMCH1-211ENST00000509638 RAG1P15918 1043 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 SELPP16109 830 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ITGB8P26012 769 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 SNW1Q13573 536 aaKnown RBP32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 KIZQ2M2Z5 673 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 DAW1Q8N136 415 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 CDY2AQ9Y6F7 541 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 MYMKA6NI61 221 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 M0QZ92 97 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 NR1I2O75469 434 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 SYN1P17600 705 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ARL2P36404 184 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 MAPK7Q13164 816 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 TRAF7Q6Q0C0 670 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 KSR1Q8IVT5 923 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ASAP3Q8TDY4 903 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 KIFAP3Q92845 792 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ZNF668Q96K58 619 aaPredicted RBP32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 DRC1Q96MC2 740 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 NLRP4Q96MN2 994 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ZMYND8Q9ULU4 1186 aaPredicted RBP32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 GINS2Q9Y248 185 aa32.83■■■□□ 2.85
LIMCH1-211ENST00000509638 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 TIMP1P01033 207 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 GPC3P51654 580 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 MGAT3Q09327 533 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 LAMTOR4Q0VGL1 99 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 KRBA2Q6ZNG9 492 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 GRAMD1CQ8IYS0 662 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 DDX12PQ92771 950 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 SCLT1Q96NL6 688 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 TRPV2Q9Y5S1 764 aa32.82■■■□□ 2.84
LIMCH1-211ENST00000509638 RSPH10B2B2RC85 870 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 CHRNA1P02708 482 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 RSPH10BP0C881 870 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 CCL23P55773 120 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 NLRP11P59045 1033 aaKnown RBP32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 MXD4Q14582 209 aaPredicted RBP32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 DYMQ7RTS9 669 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 CNNM3Q8NE01 707 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 NR2E3Q9Y5X4 410 aa32.81■■■□□ 2.84
LIMCH1-211ENST00000509638 GLRA2P23416 452 aa32.8■■■□□ 2.84
LIMCH1-211ENST00000509638 AFMP43652 599 aa32.8■■■□□ 2.84
LIMCH1-211ENST00000509638 FAM26DQ5JW98 314 aa32.8■■■□□ 2.84
LIMCH1-211ENST00000509638 NLRP7Q8WX94 980 aa32.8■■■□□ 2.84
LIMCH1-211ENST00000509638 ODF2LQ9ULJ1 636 aa32.8■■■□□ 2.84
LIMCH1-211ENST00000509638 GPR32O75388 356 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 AMPD3Q01432 767 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 CAPSQ13938 189 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 GIT2Q14161 759 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 BSNDQ8WZ55 320 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 SCLYQ96I15 445 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 OSMRQ99650 979 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 CELF4Q9BZC1 486 aaKnown RBP32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 TRIM9Q9C026 710 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 LRRC27Q9C0I9 530 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 ADAMTS10Q9H324 1103 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 TBCAO75347 108 aaKnown RBP32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 IQCF3P0C7M6 154 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 PAGE5Q96GU1 130 aa32.79■■■□□ 2.84
LIMCH1-211ENST00000509638 KINO60870 393 aaKnown RBP32.78■■■□□ 2.84
LIMCH1-211ENST00000509638 SRGAP2CP0DJJ0 459 aa32.78■■■□□ 2.84
LIMCH1-211ENST00000509638 MBTPS1Q14703 1052 aa32.78■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms