RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ALDH6A1Q02252 535 aaKnown RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 TCIRG1Q13488 830 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 RASGRF1Q13972 1273 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 TOB2Q14106 344 aaPredicted RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 DGKDQ16760 1214 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 LY6G5CQ5SRR4 150 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 FKBP15Q5T1M5 1219 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 ZNF276Q8N554 614 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 MAGEB10Q96LZ2 347 aaPredicted RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 FOXB1Q99853 325 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 CELF4Q9BZC1 486 aaKnown RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 NDOR1Q9UHB4 597 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 B3GALT1Q9Y5Z6 326 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 XDHP47989 1333 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 UBE2QL1A1L167 161 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 DAPK3O43293 454 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 ROM1Q03395 351 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 LONRF2Q1L5Z9 754 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 GAGE13Q4V321 117 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 RABL3Q5HYI8 236 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 ZC3H12BQ5HYM0 836 aaKnown RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 MRGPREQ86SM8 312 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 C2orf69Q8N8R5 385 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 ATXN2LQ8WWM7 1075 aaKnown RBP4.54□□□□□ -1.68
NUP54-208ENST00000508604 DLG3Q92796 817 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 RIOX1Q9H6W3 641 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 WDR26Q9H7D7 661 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 IL23AQ9NPF7 189 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 ZNHIT2Q9UHR6 403 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 COQ6Q9Y2Z9 468 aa4.54□□□□□ -1.68
NUP54-208ENST00000508604 CCDC85CA6NKD9 419 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 MRPS21P82921 87 aaKnown RBP4.53□□□□□ -1.68
NUP54-208ENST00000508604 ACAP1Q15027 740 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 CCDC142Q17RM4 750 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 Q6ZPA2 131 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 LENG9Q96B70 501 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 CCDC113Q9H0I3 377 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 PTGFRNQ9P2B2 879 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 PACSIN3Q9UKS6 424 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 MSRB2Q9Y3D2 182 aa4.53□□□□□ -1.68
NUP54-208ENST00000508604 MRPS23Q9Y3D9 190 aaKnown RBP4.53□□□□□ -1.68
NUP54-208ENST00000508604 C2orf78A6NCI8 922 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 RASSF10A6NK89 507 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 NPTXRO95502 500 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 IRF9Q00978 393 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 FOXB2Q5VYV0 432 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 KCNV1Q6PIU1 500 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 BCL6BQ8N143 479 aaPredicted RBP4.52□□□□□ -1.69
NUP54-208ENST00000508604 PROKR1Q8TCW9 393 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 EXOC2Q96KP1 924 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 FAM193BQ96PV7 902 aaPredicted RBP4.52□□□□□ -1.69
NUP54-208ENST00000508604 GPHA2Q96T91 129 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 MNTQ99583 582 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 MAGEL2Q9UJ55 1249 aa4.52□□□□□ -1.69
NUP54-208ENST00000508604 MAFGO15525 162 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 RECQL4O94761 1208 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 ABHD16AO95870 558 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 LMNAP02545 664 aaKnown RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 JUNP05412 331 aaKnown RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 VSIG10L2P0DP72 767 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 GNAT2P19087 354 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 ADRA1BP35368 520 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 COL10A1Q03692 680 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 CATSPEREQ5SY80 951 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 MBNL2Q5VZF2 373 aaKnown RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 CC2D1AQ6P1N0 951 aaPredicted RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 MB21D1Q8N884 522 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 PLA2G15Q8NCC3 412 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 OR5AN1Q8NGI8 311 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 PGBD4Q96DM1 585 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 SLC52A2Q9HAB3 445 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 NCDNQ9UBB6 729 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 SYNPO2Q9UMS6 1093 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 FZD1Q9UP38 647 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 ITGB1P05556 798 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 FBLP22087 321 aaKnown RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 FNTBP49356 437 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 SLC6A3Q01959 620 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 TM4SF20Q53R12 229 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 OVCH1Q7RTY7 1134 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 ELOA2Q8IYF1 753 aaPredicted RBP4.51□□□□□ -1.69
NUP54-208ENST00000508604 WDR92Q96MX6 357 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 BOCQ9BWV1 1114 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 KCMF1Q9P0J7 381 aa4.51□□□□□ -1.69
NUP54-208ENST00000508604 KDM2BQ8NHM5 1336 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 FAM153BP0C7A2 387 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 RABGGTBP53611 331 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 NPEPPSP55786 919 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 ARHGAP44Q17R89 818 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 STRIP1Q5VSL9 837 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 SLFN12LQ6IEE8 588 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 RTN4RL1Q86UN2 441 aaPredicted RBP4.5□□□□□ -1.69
NUP54-208ENST00000508604 THAP3Q8WTV1 239 aaPredicted RBP4.5□□□□□ -1.69
NUP54-208ENST00000508604 RPGRQ92834 1020 aaKnown RBP4.5□□□□□ -1.69
NUP54-208ENST00000508604 DYDC2Q96IM9 177 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 ZNF512Q96ME7 567 aaPredicted RBP4.5□□□□□ -1.69
NUP54-208ENST00000508604 CYP4F11Q9HBI6 524 aa4.5□□□□□ -1.69
NUP54-208ENST00000508604 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 UBA6A0AVT1 1052 aaPredicted RBP4.49□□□□□ -1.69
NUP54-208ENST00000508604 KLRG2A4D1S0 409 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms