RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 RWDD3Q9Y3V2 267 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 ATP6V0A2Q9Y487 856 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 ZNF451Q9Y4E5 1061 aa5.75□□□□□ -1.49
NUP54-206ENST00000508465 KDM2BQ8NHM5 1336 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 ZNF521Q96K83 1311 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 PCCAP05165 728 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 VEGFAP15692 232 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 IARSP41252 1262 aaKnown RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 RPS8P62241 208 aaKnown RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 GPSM2P81274 684 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 NEXNQ0ZGT2 675 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 SMAD4Q13485 552 aaKnown RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 GRAPQ13588 217 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 PPP2R5DQ14738 602 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 SF3B3Q15393 1217 aaKnown RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 SLC4A10Q6U841 1118 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 DPP8Q6V1X1 898 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 UBE3BQ7Z3V4 1068 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 PPFIBP1Q86W92 1011 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 C16orf71Q8IYS4 520 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 GRAPLQ8TC17 118 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 DDX11Q96FC9 970 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 GPR101Q96P66 508 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 FERD3LQ96RJ6 166 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 SPON2Q9BUD6 331 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 BCL2L13Q9BXK5 485 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 TMX4Q9H1E5 349 aaPredicted RBP5.74□□□□□ -1.49
NUP54-206ENST00000508465 FAM86C1Q9NVL1 165 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 ARFGEF1Q9Y6D6 1849 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 ZNF541Q9H0D2 1346 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 LTBP3Q9NS15 1303 aa5.74□□□□□ -1.49
NUP54-206ENST00000508465 SBF1O95248 1867 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 TNRC6CQ9HCJ0 1690 aaKnown RBP5.73□□□□□ -1.49
NUP54-206ENST00000508465 IBTKQ9P2D0 1353 aaPredicted RBP5.73□□□□□ -1.49
NUP54-206ENST00000508465 MROH6A6NGR9 719 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 E9PSI1 815 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 PPIP5K2O43314 1243 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 PDE8AO60658 829 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 TOMM70O94826 608 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 C6P13671 934 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 RPL13P26373 211 aaKnown RBP5.73□□□□□ -1.49
NUP54-206ENST00000508465 SEPHS1P49903 392 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 GCKRQ14397 625 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 FAM26FQ5R3K3 315 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 TTLL11Q8NHH1 800 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 DNAAF4Q8WXU2 420 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 SSH1Q8WYL5 1049 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 KISS1RQ969F8 398 aaPredicted RBP5.73□□□□□ -1.49
NUP54-206ENST00000508465 KRTAP3-1Q9BYR8 98 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 GREM2Q9H772 168 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 INVSQ9Y283 1065 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 TAF1P21675 1872 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 CACNA1SQ13698 1873 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 CCDC88AQ3V6T2 1871 aa5.73□□□□□ -1.49
NUP54-206ENST00000508465 TRBV23OR9-2A0A075B6M9 112 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 FZD9O00144 591 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 AURKAO14965 403 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 RAD17O75943 681 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 CASP7P55210 303 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 SURF1Q15526 300 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 CCDC152Q4G0S7 254 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 EPHA10Q5JZY3 1008 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 BEND3Q5T5X7 828 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 FBXW10Q5XX13 1052 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 UNC5AQ6ZN44 842 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 USP51Q70EK9 711 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 TRMT2AQ8IZ69 625 aaKnown RBP5.72□□□□□ -1.49
NUP54-206ENST00000508465 LINS1Q8NG48 757 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 SH3RF3Q8TEJ3 882 aaPredicted RBP5.72□□□□□ -1.49
NUP54-206ENST00000508465 JDP2Q8WYK2 163 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 PSMD1Q99460 953 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 C11orf84Q9BUA3 381 aaPredicted RBP5.72□□□□□ -1.49
NUP54-206ENST00000508465 WHRNQ9P202 907 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 POLLQ9UGP5 575 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 DLEC1Q9Y238 1755 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 RNF123Q5XPI4 1314 aa5.72□□□□□ -1.49
NUP54-206ENST00000508465 HSP90B1P14625 803 aaKnown RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 TACR2P21452 398 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 GUCY2CP25092 1073 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 EPS15P42566 896 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 EIF6P56537 245 aaKnown RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 CXCL9Q07325 125 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 WWC2Q6AWC2 1192 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 ANKRD18AQ8IVF6 992 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 NIM1KQ8IY84 436 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 KYQ8NBH2 561 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 TBC1D16Q8TBP0 767 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 GORASP1Q9BQQ3 440 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 RTFDC1Q9BY42 306 aaPredicted RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 TAF1DQ9H5J8 278 aaPredicted RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 DBNDD1Q9H9R9 158 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 C9orf78Q9NZ63 289 aaPredicted RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.71□□□□□ -1.5
NUP54-206ENST00000508465 GULP1Q9UBP9 304 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 ZNF214Q9UL59 606 aaPredicted RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 NOB1Q9ULX3 412 aaKnown RBP5.71□□□□□ -1.5
NUP54-206ENST00000508465 FER1L6Q2WGJ9 1857 aa5.71□□□□□ -1.5
NUP54-206ENST00000508465 PCNTO95613 3336 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 COL4A1P02462 1669 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 COL4A5P29400 1685 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms