RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 IQCEQ6IPM2 695 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 DDX46Q7L014 1031 aaKnown RBP8.23□□□□□ -1.09
VIM-207ENST00000495528 USP33Q8TEY7 942 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 INTS4Q96HW7 963 aaKnown RBP8.23□□□□□ -1.09
VIM-207ENST00000495528 DHRS4Q9BTZ2 278 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 MCOLN1Q9GZU1 580 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 PNNQ9H307 717 aaKnown RBP8.23□□□□□ -1.09
VIM-207ENST00000495528 PRKRIP1Q9H875 184 aaPredicted RBP8.23□□□□□ -1.09
VIM-207ENST00000495528 TRMT112Q9UI30 125 aaKnown RBP8.23□□□□□ -1.09
VIM-207ENST00000495528 ACSL6Q9UKU0 697 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 PCDHA2Q9Y5H9 948 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 MAPK8IP3Q9UPT6 1336 aa8.23□□□□□ -1.09
VIM-207ENST00000495528 CA12O43570 354 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 PPP1R11O60927 126 aaPredicted RBP8.22□□□□□ -1.09
VIM-207ENST00000495528 LTBRP36941 435 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 KCNAB2Q13303 367 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 GRAPQ13588 217 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 RALBP1Q15311 655 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 KRT24Q2M2I5 525 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 HSP90AB3PQ58FF7 597 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 ACBD5Q5T8D3 534 aaPredicted RBP8.22□□□□□ -1.09
VIM-207ENST00000495528 BICRALQ6AI39 1079 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 KCNT2Q6UVM3 1135 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 RCBTB1Q8NDN9 531 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 ZSWIM2Q8NEG5 633 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 GRAPLQ8TC17 118 aaPredicted RBP8.22□□□□□ -1.09
VIM-207ENST00000495528 CHAMP1Q96JM3 812 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 MARCH2Q9P0N8 246 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 MRPS23Q9Y3D9 190 aaKnown RBP8.22□□□□□ -1.09
VIM-207ENST00000495528 SH3TC1Q8TE82 1336 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 LAMB4A4D0S4 1761 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 KDM3BQ7LBC6 1761 aa8.22□□□□□ -1.09
VIM-207ENST00000495528 KRTAP9-6A0A140TA67 174 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 H7C1D1 291 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 PSMD14O00487 310 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 FUCA1P04066 466 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 PNLIPP16233 465 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 ARL4AP40617 200 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 TMPOP42166 694 aaKnown RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 LONRF2Q1L5Z9 754 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 DPF3Q92784 378 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 CELF1Q92879 486 aaKnown RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 DIRC2Q96SL1 478 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 PHF20Q9BVI0 1012 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 SLC6A17Q9H1V8 727 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 CRTAC1Q9NQ79 661 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 PDLIM7Q9NR12 457 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 BABAM1Q9NWV8 329 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 FBLN5Q9UBX5 448 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 TRAF6Q9Y4K3 522 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 TIMM13Q9Y5L4 95 aaPredicted RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 MRPL42Q9Y6G3 142 aaKnown RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.21□□□□□ -1.1
VIM-207ENST00000495528 CDHR2Q9BYE9 1310 aa8.21□□□□□ -1.1
VIM-207ENST00000495528 MYO1BO43795 1136 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 BCL6P41182 706 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 HUNKP57058 714 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 SUMO1P63165 101 aaKnown RBP8.2□□□□□ -1.1
VIM-207ENST00000495528 GPSM2P81274 684 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 NOGQ13253 232 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 SQSTM1Q13501 440 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 TBC1D10BQ4KMP7 808 aaPredicted RBP8.2□□□□□ -1.1
VIM-207ENST00000495528 JAZF1Q86VZ6 243 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 TEX2Q8IWB9 1127 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 LZTR1Q8N653 840 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 DPF2Q92785 391 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 FAM89AQ96GI7 184 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 RNPC3Q96LT9 517 aaKnown RBP8.2□□□□□ -1.1
VIM-207ENST00000495528 DBNDD1Q9H9R9 158 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 KCNK12Q9HB15 430 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.2□□□□□ -1.1
VIM-207ENST00000495528 POLLQ9UGP5 575 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 FBXL7Q9UJT9 491 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 THSD7BQ9C0I4 1608 aa8.2□□□□□ -1.1
VIM-207ENST00000495528 ESYT3A0FGR9 886 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 NUDT19A8MXV4 375 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 CHL1O00533 1208 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 MSCO60682 206 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 FPR2P25090 351 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 RPL11P62913 178 aaKnown RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 SF3B3Q15393 1217 aaKnown RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 MLANAQ16655 118 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 CCDC184Q52MB2 194 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 RGMBQ6NW40 437 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 PRR23BQ6ZRT6 265 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 CEP68Q76N32 757 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 KRT26Q7Z3Y9 468 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 DCAF4Q8WV16 495 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 KISS1RQ969F8 398 aaPredicted RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 ISCA1Q9BUE6 129 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 NSUN3Q9H649 340 aaKnown RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 RXFP1Q9HBX9 757 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 GBA2Q9HCG7 927 aaPredicted RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 CHPF2Q9P2E5 772 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 LAS1LQ9Y4W2 734 aaKnown RBP8.19□□□□□ -1.1
VIM-207ENST00000495528 DLG5Q8TDM6 1919 aa8.19□□□□□ -1.1
VIM-207ENST00000495528 TRPM7Q96QT4 1865 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 LRRC10BA6NIK2 292 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 ADM5C9JUS6 153 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms