RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TCIRG1Q13488 830 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 ACAP1Q15027 740 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 CATSPEREQ5SY80 951 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 CKAP2LQ8IYA6 745 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 SYNE4Q8N205 404 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 ERCC4Q92889 916 aaPredicted RBP6.25□□□□□ -1.41
VPS50-219ENST00000495039 TCF25Q9BQ70 676 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 COQ6Q9Y2Z9 468 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 MRPS23Q9Y3D9 190 aaKnown RBP6.25□□□□□ -1.41
VPS50-219ENST00000495039 XDHP47989 1333 aa6.25□□□□□ -1.41
VPS50-219ENST00000495039 UBE2QL1A1L167 161 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 FAM20BO75063 409 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 EFCAB14O75071 495 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 LONRF2Q1L5Z9 754 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 GAGE13Q4V321 117 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 RABL3Q5HYI8 236 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 OR5AN1Q8NGI8 311 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 E2F7Q96AV8 911 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 LENG9Q96B70 501 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 IL23AQ9NPF7 189 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 NDOR1Q9UHB4 597 aa6.24□□□□□ -1.41
VPS50-219ENST00000495039 C2orf78A6NCI8 922 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 GOLGA6L6A8MZA4 724 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 LMO1P25800 156 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 ADAM8P78325 824 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 HNRNPA0Q13151 305 aaKnown RBP6.23□□□□□ -1.41
VPS50-219ENST00000495039 FKBP15Q5T1M5 1219 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 MFSD5Q6N075 450 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 OVCH1Q7RTY7 1134 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 RTN4RL1Q86UN2 441 aaPredicted RBP6.23□□□□□ -1.41
VPS50-219ENST00000495039 ZNF276Q8N554 614 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 FOXRED1Q96CU9 486 aaPredicted RBP6.23□□□□□ -1.41
VPS50-219ENST00000495039 CCDC113Q9H0I3 377 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 SLC52A2Q9HAB3 445 aa6.23□□□□□ -1.41
VPS50-219ENST00000495039 KLRG2A4D1S0 409 aaPredicted RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 DIAPH1O60610 1272 aaKnown RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 STK10O94804 968 aaKnown RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 FAM153BP0C7A2 387 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 PROZP22891 400 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 RABGGTBP53611 331 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 IRF9Q00978 393 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 DGKDQ16760 1214 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 CCDC142Q17RM4 750 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 MBNL2Q5VZF2 373 aaKnown RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 HTR3DQ70Z44 454 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 ATXN2LQ8WWM7 1075 aaKnown RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 MAGEB10Q96LZ2 347 aaPredicted RBP6.22□□□□□ -1.41
VPS50-219ENST00000495039 TRPS1Q9UHF7 1281 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 MAGEL2Q9UJ55 1249 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 RCAN3Q9UKA8 241 aa6.22□□□□□ -1.41
VPS50-219ENST00000495039 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 CCDC85CA6NKD9 419 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 PPFIA4O75335 1185 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 IPO13O94829 963 aaKnown RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 RASGRP1O95267 797 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 NUDT3O95989 172 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 LMNAP02545 664 aaKnown RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 ROM1Q03395 351 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 ZC3H12BQ5HYM0 836 aaKnown RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 KRT40Q6A162 431 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 CC2D1AQ6P1N0 951 aaPredicted RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 RHOUQ7L0Q8 258 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 GSTCDQ8NEC7 633 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 NKD2Q969F2 451 aaPredicted RBP6.21□□□□□ -1.42
VPS50-219ENST00000495039 MNTQ99583 582 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 WDR26Q9H7D7 661 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 PACSIN3Q9UKS6 424 aa6.21□□□□□ -1.42
VPS50-219ENST00000495039 MFAP3LO75121 409 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 NPTXRO95502 500 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 PRLP01236 227 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 VSIG10L2P0DP72 767 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 FNTBP49356 437 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 SLC6A3Q01959 620 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 PTPAQ15257 358 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 LY6G5CQ5SRR4 150 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 ELOA2Q8IYF1 753 aaPredicted RBP6.2□□□□□ -1.42
VPS50-219ENST00000495039 C2orf69Q8N8R5 385 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 GPR150Q8NGU9 434 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 ARL8AQ96BM9 186 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 PGBD4Q96DM1 585 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 FZD1Q9UP38 647 aa6.2□□□□□ -1.42
VPS50-219ENST00000495039 TOX4O94842 621 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 ITGB1P05556 798 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 RGS3P49796 1198 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 ANTXR2P58335 489 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 MRPS21P82921 87 aaKnown RBP6.19□□□□□ -1.42
VPS50-219ENST00000495039 CLEC14AQ86T13 490 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 VRK3Q8IV63 474 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 MB21D1Q8N884 522 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 PLA2G15Q8NCC3 412 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 PROKR1Q8TCW9 393 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 BOCQ9BWV1 1114 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 KCMF1Q9P0J7 381 aa6.19□□□□□ -1.42
VPS50-219ENST00000495039 ABHD16AO95870 558 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 JUNP05412 331 aaKnown RBP6.18□□□□□ -1.42
VPS50-219ENST00000495039 IL12RB1P42701 662 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 TMEM177Q53S58 311 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 TRIM61Q5EBN2 209 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 SLFN12LQ6IEE8 588 aa6.18□□□□□ -1.42
VPS50-219ENST00000495039 KCNV1Q6PIU1 500 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms