RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	CLUH	O75153	1309 aa		13.31	□□□□□ -0.28
HDAC6-233	ENST00000489352	EVPL	Q92817	2033 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	CCDC195	A0A1B0GUA6	201 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	POLR2M	P0CAP2	368 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	CTSA	P10619	480 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	INSRR	P14616	1297 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	POLG	P54098	1239 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	MLF2	Q15773	248 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	C12orf50	Q8NA57	414 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	SEPT1	Q8WYJ6	367 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	KLHL5	Q96PQ7	755 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	MYADM	Q96S97	322 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	ZBP1	Q9H171	429 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	PIDD1	Q9HB75	910 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	NOC2L	Q9Y3T9	749 aa	Known RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	MTF2	Q9Y483	593 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	PCDHA2	Q9Y5H9	948 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	KDM3A	Q9Y4C1	1321 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	ITPR1	Q14643	2758 aa		13.3	□□□□□ -0.28
HDAC6-233	ENST00000489352	CARNS1	A5YM72	827 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	TRIM6-TRIM34	B2RNG4	842 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	TAF4	O00268	1085 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	LAMP2	P13473	410 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	BCAR1	P56945	870 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	GPC5	P78333	572 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	SIM2	Q14190	667 aa	Predicted RBP	13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	SLC44A4	Q53GD3	710 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	CYP26C1	Q6V0L0	522 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	PHKB	Q93100	1093 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	GPATCH3	Q96I76	525 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	NELL2	Q99435	816 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	SEC62	Q99442	399 aa	Known RBP	13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	SENP7	Q9BQF6	1050 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	ECHDC1	Q9NTX5	307 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	ANAPC4	Q9UJX5	808 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	NUMBL	Q9Y6R0	609 aa		13.29	□□□□□ -0.28
HDAC6-233	ENST00000489352	KCNK5	O95279	499 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	ZSCAN20	P17040	1043 aa	Predicted RBP	13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	CLCN4	P51793	760 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	FAM189B	P81408	668 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	PFKP	Q01813	784 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	FOXC1	Q12948	553 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	INPP4A	Q96PE3	977 aa	Predicted RBP	13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	MRPL9	Q9BYD2	267 aa	Known RBP	13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	AZI2	Q9H6S1	392 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	LTB4R2	Q9NPC1	389 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	TELO2	Q9Y4R8	837 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	GREB1	Q4ZG55	1949 aa		13.28	□□□□□ -0.28
HDAC6-233	ENST00000489352	SMIM35	A0A1B0GVV1	85 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	CD72	P21854	359 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	LIMK1	P53667	647 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	TRAF1	Q13077	416 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	ASPRV1	Q53RT3	343 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	PSAPL1	Q6NUJ1	521 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	GET4	Q7L5D6	327 aa	Predicted RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	DDX53	Q86TM3	631 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	NLRX1	Q86UT6	975 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	CMAS	Q8NFW8	434 aa	Predicted RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	SMG7	Q92540	1137 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	DDX23	Q9BUQ8	820 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	ADAM33	Q9BZ11	813 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	KAT14	Q9H8E8	782 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	JMJD4	Q9H9V9	463 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	PRMT8	Q9NR22	394 aa	Predicted RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	MAN1C1	Q9NR34	630 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	MRPS17	Q9Y2R5	130 aa	Known RBP	13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	ADAMTS20	P59510	1910 aa		13.27	□□□□□ -0.29
HDAC6-233	ENST00000489352	ANHX	E9PGG2	379 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	OPLAH	O14841	1288 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	INPPL1	O15357	1258 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	RPS9	P46781	194 aa	Known RBP	13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	MRPS9	P82933	396 aa	Known RBP	13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	GHRHR	Q02643	423 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	HTR4	Q13639	388 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	PNMA1	Q8ND90	353 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	STK39	Q9UEW8	545 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	DMXL2	Q8TDJ6	3036 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	AKAP13	Q12802	2813 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	IGSF10	Q6WRI0	2623 aa		13.26	□□□□□ -0.29
HDAC6-233	ENST00000489352	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	SSB	P05455	408 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	FGR	P09769	529 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	PARP1	P09874	1014 aa	Known RBP	13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	MTAP	Q13126	283 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	SEMA3F	Q13275	785 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	PLCB4	Q15147	1175 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	HELQ	Q8TDG4	1101 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	TRAPPC12	Q8WVT3	735 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	LRRCC1	Q9C099	1032 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	CDHR5	Q9HBB8	845 aa		13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	13.25	□□□□□ -0.29
HDAC6-233	ENST00000489352	GSTTP1	A0A1W2PQM5	241 aa		13.24	□□□□□ -0.29
HDAC6-233	ENST00000489352	TM4SF5	O14894	197 aa		13.24	□□□□□ -0.29
HDAC6-233	ENST00000489352	CNP	P09543	421 aa	Known RBP	13.24	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms