RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 APLP1P51693 650 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ACTR2P61160 394 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 TRIM14Q14142 442 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 MAN2A1Q16706 1144 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 KNOP1Q1ED39 458 aaKnown RBP13.37□□□□□ -0.27
HDAC6-230ENST00000488543 EDRF1Q3B7T1 1238 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 VWA3BQ502W6 1294 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 SWSAP1Q6NVH7 229 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 PADI6Q6TGC4 694 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 PARVGQ9HBI0 331 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ZCCHC17Q9NP64 241 aaKnown RBP13.37□□□□□ -0.27
HDAC6-230ENST00000488543 TRAF3IP3Q9Y228 551 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ZMYM2Q9UBW7 1377 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 HIP1RO75146 1068 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 NMT1P30419 496 aaKnown RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 KLK7P49862 253 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 PSMC5P62195 406 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 GABPB1Q06547 395 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 ABRAQ8N0Z2 381 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 MYCT1Q8N699 235 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 ERGIC2Q96RQ1 377 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 ARHGAP39Q9C0H5 1083 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 CREBZFQ9NS37 354 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 TCEAL9Q9UHQ7 104 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 PCDHA10Q9Y5I2 948 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 PES1O00541 588 aaKnown RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 EIF3DO15371 548 aaKnown RBP eCLIP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 CA12O43570 354 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 SASH3O75995 380 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 STBD1O95210 358 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 GCNT3O95395 438 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 SNAI1O95863 264 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 YWHABP31946 246 aaKnown RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 MARSP56192 900 aaKnown RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 PPP2R3AQ06190 1150 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 KCNA1Q09470 495 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 TBC1D8BQ0IIM8 1120 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 NOGQ13253 232 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 CNGA4Q8IV77 575 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 CCDC60Q8IWA6 550 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-230ENST00000488543 ACRBPQ8NEB7 543 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 MORC4Q8TE76 937 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 CCDC51Q96ER9 411 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 MAML3Q96JK9 1138 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 TTYH3Q9C0H2 523 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 GABBR1Q9UBS5 961 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 SEL1LQ9UBV2 794 aa13.36□□□□□ -0.27
HDAC6-230ENST00000488543 BACH1O14867 736 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 CCP110O43303 1012 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ZNF862O60290 1169 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 FARP2O94887 1054 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-230ENST00000488543 GGPS1O95749 300 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 TBC1D8O95759 1140 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 STRA6Q9BX79 667 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 NDST4Q9H3R1 872 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 PUF60Q9UHX1 559 aaKnown RBP13.35□□□□□ -0.27
HDAC6-230ENST00000488543 PLXNB2O15031 1838 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 TTC26A0AVF1 554 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ASB14A6NK59 587 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 PDXKO00764 312 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 TGFB1I1O43294 461 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 NPEPPSP55786 919 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 CAP1Q01518 475 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 CCL14Q16627 93 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 HSDL1Q3SXM5 330 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ZC2HC1CQ53FD0 456 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-230ENST00000488543 PRAMEF19Q5SWL8 479 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 MORN1Q5T089 497 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ABHD15Q6UXT9 468 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 MAEAQ7L5Y9 396 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 IKZF4Q9H2S9 585 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ANKEF1Q9NU02 776 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 ABHD10Q9NUJ1 306 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 TYW1Q9NV66 732 aaKnown RBP13.35□□□□□ -0.27
HDAC6-230ENST00000488543 FLRT1Q9NZU1 646 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 SIK3Q9Y2K2 1263 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 MRFAP1Q9Y605 127 aa13.35□□□□□ -0.27
HDAC6-230ENST00000488543 MYH9P35579 1960 aaKnown RBP13.35□□□□□ -0.27
HDAC6-230ENST00000488543 PPP1R37O75864 691 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 ZRANB2O95218 330 aaKnown RBP eCLIP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 TXNP10599 105 aaKnown RBP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 CYP2B6P20813 491 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 GYS2P54840 703 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 BMS1Q14692 1282 aaKnown RBP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 PLA2G4FQ68DD2 849 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 TAPT1Q6NXT6 567 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 CCDC62Q6P9F0 684 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 TMCO3Q6UWJ1 677 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 ZNF720Q7Z2F6 126 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 TRIM59Q8IWR1 403 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 MPHOSPH6Q99547 160 aaKnown RBP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 CAPN11Q9UMQ6 739 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 UBE4BO95155 1302 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 SYNGAP1Q96PV0 1343 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 GSTTP1A0A1W2PQM5 241 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 SLC15A5A6NIM6 579 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 USO1O60763 962 aaKnown RBP13.34□□□□□ -0.27
HDAC6-230ENST00000488543 GNA14O95837 355 aa13.34□□□□□ -0.27
HDAC6-230ENST00000488543 TPM1P09493 284 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms