RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RSPH10BP0C881 870 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 DPYDQ12882 1025 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 MAPK7Q13164 816 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 MKRN4PQ13434 485 aaPredicted RBP13.56□□□□□ -0.24
SDC1-206ENST00000482879 DRP2Q13474 957 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 CCDC65Q8IXS2 484 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 KIAA0319LQ8IZA0 1049 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 LINC01465Q8N7H1 131 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 DNAJB3Q8WWF6 145 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 KIFAP3Q92845 792 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 ERCC4Q92889 916 aaPredicted RBP13.56□□□□□ -0.24
SDC1-206ENST00000482879 SYAP1Q96A49 352 aaPredicted RBP13.56□□□□□ -0.24
SDC1-206ENST00000482879 DRC1Q96MC2 740 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 FAM49AQ9H0Q0 323 aaPredicted RBP13.56□□□□□ -0.24
SDC1-206ENST00000482879 TRPV6Q9H1D0 765 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 PANK4Q9NVE7 773 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 ODF2LQ9ULJ1 636 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 AKT3Q9Y243 479 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 MROH7Q68CQ1 1323 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 BRCA2P51587 3418 aa13.56□□□□□ -0.24
SDC1-206ENST00000482879 TLR3O15455 904 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 B4GALT4O60513 344 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 PQBP1O60828 265 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 SMC2O95347 1197 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 RPN1P04843 607 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 ARL2P36404 184 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 PTK7Q13308 1070 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 SNX17Q15036 470 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 TRIM60Q495X7 471 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 CCDC183Q5T5S1 534 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 C1orf53Q5VUE5 145 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 CAVIN1Q6NZI2 390 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 TAF2Q6P1X5 1199 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 UNC13DQ70J99 1090 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 UBE2Q1Q7Z7E8 422 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 SERINC5Q86VE9 423 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 FAM126BQ8IXS8 530 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 DAW1Q8N136 415 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 MYCT1Q8N699 235 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 PRPF31Q8WWY3 499 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 PSPC1Q8WXF1 523 aaKnown RBP13.55□□□□□ -0.24
SDC1-206ENST00000482879 SMARCE1Q969G3 411 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 CTAGE1Q96RT6 745 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 MAP7D2Q96T17 732 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 TMEM63CQ9P1W3 806 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 PCDHA5Q9Y5H7 936 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 COL4A3BPQ9Y5P4 624 aa13.55□□□□□ -0.24
SDC1-206ENST00000482879 PVALEFA0A1B0GWK0 134 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 DCDC2CA8MYV0 355 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 ASAP2O43150 1006 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 KLRC4O43908 158 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 VTNP04004 478 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 PLS3P13797 630 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 GAP43P17677 238 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 GLRA2P23416 452 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 RTP1P59025 263 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 TLE2Q04725 743 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 COASYQ13057 564 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 MXD4Q14582 209 aaPredicted RBP13.54□□□□□ -0.24
SDC1-206ENST00000482879 LRRC26Q2I0M4 334 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 HERC4Q5GLZ8 1057 aaPredicted RBP13.54□□□□□ -0.24
SDC1-206ENST00000482879 ANKRD33Q7Z3H0 272 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 RSPH3Q86UC2 560 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 RHPN2Q8IUC4 686 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 NME8Q8N427 588 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 ASAP3Q8TDY4 903 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 CCDC47Q96A33 483 aaKnown RBP13.54□□□□□ -0.24
SDC1-206ENST00000482879 IFT74Q96LB3 600 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 PARVGQ9HBI0 331 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 ATP11BQ9Y2G3 1177 aa13.54□□□□□ -0.24
SDC1-206ENST00000482879 FRMD3A2A2Y4 597 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 CD4P01730 458 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 SRGAP2CP0DJJ0 459 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 ZNF131P52739 623 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 PEX3P56589 373 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 LAMTOR4Q0VGL1 99 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 PPP2R5AQ15172 486 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 KMT5BQ4FZB7 885 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 ODR4Q5SWX8 454 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 SFR1Q86XK3 245 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 KSR1Q8IVT5 923 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 BSNDQ8WZ55 320 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 WNT8BQ93098 351 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 TOX2Q96NM4 488 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 GSDMAQ96QA5 445 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 PPP1R16BQ96T49 567 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 C17orf75Q9HAS0 396 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 EXOC1Q9NV70 894 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 KIAA1468Q9P260 1216 aa13.53□□□□□ -0.24
SDC1-206ENST00000482879 LARSQ9P2J5 1176 aaKnown RBP13.53□□□□□ -0.24
SDC1-206ENST00000482879 ALPK3Q96L96 1907 aa13.52□□□□□ -0.24
SDC1-206ENST00000482879 CCDC169A6NNP5 214 aa13.52□□□□□ -0.25
SDC1-206ENST00000482879 RPLP2P05387 115 aaKnown RBP13.52□□□□□ -0.25
SDC1-206ENST00000482879 THPOP40225 353 aa13.52□□□□□ -0.25
SDC1-206ENST00000482879 SARSP49591 514 aaKnown RBP13.52□□□□□ -0.25
SDC1-206ENST00000482879 SMTNP53814 917 aa13.52□□□□□ -0.25
SDC1-206ENST00000482879 NLRP11P59045 1033 aaKnown RBP13.52□□□□□ -0.25
SDC1-206ENST00000482879 CDC42EP1Q00587 391 aa13.52□□□□□ -0.25
SDC1-206ENST00000482879 TMEM62Q0P6H9 643 aa13.52□□□□□ -0.25
SDC1-206ENST00000482879 DMP1Q13316 513 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms