RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 AFPP02771 609 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ATP4AP20648 1035 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 RPL21P46778 160 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 AUHQ13825 339 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 SLFN11Q7Z7L1 901 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 GPBP1Q86WP2 473 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ARHGEF2Q92974 986 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 STMN4Q9H169 189 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ETAA1Q9NY74 926 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 NIP7Q9Y221 180 aaKnown RBP eCLIP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 XRCC5P13010 732 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 MAPK7Q13164 816 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 GBP7Q8N8V2 638 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 CTNNBL1Q8WYA6 563 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 TSC22D3Q99576 134 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 DNAJC17Q9NVM6 304 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ZMYND8Q9ULU4 1186 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 CICQ96RK0 1608 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ZNF804BA4D1E1 1349 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 DPPA5A6NC42 116 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 PALM3A6NDB9 673 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 MXRA7P84157 204 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 ARHGEF3Q9NR81 526 aa20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 NKX1-2Q9UD57 310 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-207ENST00000479965 GH1P01241 217 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 NEFHP12036 1026 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 FXR2P51116 673 aaKnown RBP eCLIP20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 SLC30A9Q6PML9 568 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 DZIP1Q86YF9 867 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 ARL2BPQ9Y2Y0 163 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 CASZ1Q86V15 1759 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 IGSF9BQ9UPX0 1349 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 KLHL33A6NCF5 533 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 SEPT2Q15019 361 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 GALNTL6Q49A17 601 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 PAIP2Q9BPZ3 127 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 TRIM7Q9C029 511 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 GCNT4Q9P109 453 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 TRPM3Q9HCF6 1732 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 PLCH1Q4KWH8 1693 aa20.28■□□□□ 0.84
CCDC88B-207ENST00000479965 RAD23BP54727 409 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 RWDD2BP57060 319 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 FAM47EQ6ZV65 393 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 FBF1Q8TES7 1133 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 NAP1L3Q99457 506 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 KLHL14Q9P2G3 628 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 CTNNAL1Q9UBT7 734 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 RIPK2O43353 540 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 ALG3Q92685 438 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 TBK1Q9UHD2 729 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 PCDHB13Q9Y5F0 798 aa20.27■□□□□ 0.84
CCDC88B-207ENST00000479965 FRMPD2Q68DX3 1309 aaPredicted RBP20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 ERVV-1B6SEH8 477 aa20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 GNAT1P11488 350 aa20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 PECAM1P16284 738 aaPredicted RBP20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 CASP5P51878 434 aa20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 SEPT14Q6ZU15 432 aa20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 DDX23Q9BUQ8 820 aaKnown RBP20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 CHORDC1Q9UHD1 332 aaPredicted RBP20.27■□□□□ 0.83
CCDC88B-207ENST00000479965 MYH3P11055 1940 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 FAM187AA6NFU0 413 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 DDX3YO15523 660 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 UBE2SQ16763 222 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 VSIG1Q86XK7 387 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 CCDC105Q8IYK2 499 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 TMEM237Q96Q45 408 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 KCTD10Q9H3F6 313 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 CCDC134Q9H6E4 229 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 RXFP1Q9HBX9 757 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 GRHL1Q9NZI5 618 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 POTEB3A0JP26 581 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 LRRD1A4D1F6 860 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 POTECB2RU33 542 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 GBP1P32455 592 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 STX2P32856 288 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 KCNJ1P48048 391 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 SPDYCQ5MJ68 293 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 C12orf60Q5U649 245 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 POTEBQ6S5H4 581 aa20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 TGS1Q96RS0 853 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-207ENST00000479965 SPDYE5A6NIY4 337 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 CLIC2O15247 247 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 PLA2G4BP0C869 781 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 STAT1P42224 750 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 TNIP1Q15025 636 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 LNX1Q8TBB1 728 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 ARHGEF26Q96DR7 871 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 LBHD1Q9BQE6 289 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 PAPOLBQ9NRJ5 636 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 PCDHA12Q9UN75 941 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 UBR2Q8IWV8 1755 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 DHX34Q14147 1143 aaKnown RBP20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 TMEM119Q4V9L6 283 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 SBK1Q52WX2 424 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 TBC1D16Q8TBP0 767 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 PLS1Q14651 629 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 RFFLQ8WZ73 363 aa20.25■□□□□ 0.83
CCDC88B-207ENST00000479965 OAS1P00973 400 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 CASP4P49662 377 aa20.24■□□□□ 0.83
CCDC88B-207ENST00000479965 PAPOLAP51003 745 aaKnown RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms